extractEvents {amplican} | R Documentation |
Extracts events (insertions, deletions, mismatches) from alignments into data.frame. Can use multiple cores as process is quite slow. All events are relative towards forward strand. "-" in strand column indicates which events were from reverse reads.
extractEvents(object, use_parallel = FALSE)
object |
(AlignmentsExperimentSet) |
use_parallel |
(boolean) Set to TRUE, if you have registered
multicore back-end with |
(data.frame) Compatible with GRanges
style.
file_path <- system.file("extdata", "results", "alignments", "AlignmentsExperimentSet.rds", package = "amplican") aln <- readRDS(file_path) extractEvents(aln)