plotIntens {affyILM} | R Documentation |
Plot the PM intensity and the calculated background of one probe set.
plotIntens(object,y,z,...)
object |
An object of type |
y |
A probe set |
z |
The name of a sample |
... |
Graphical parameters can be given as arguments to |
plotIntens
plots one graph for each CEL-file. Note that it is only possible to plot one probe set at a time (if y (or z) is a vector, only the first value is used). If y=NULL or z=NULL, there is no output.
Myriam Kroll, Fabrice Berger and Enrico Carlon
path <- system.file("rawData", "FusionSDK_HG-Focus", "HG-Focus", "2.Calvin", package="AffymetrixDataTestFiles") file1 <- file.path(path,"HG-Focus-1-121502.CEL") file2 <- file.path(path,"HG-Focus-2-121502.CEL") result2 <- ilm(c(file1,file2)) ## plot output plotIntens(result2,y="203561_at",z="HG-Focus-2-121502.CEL")