get_unknown_ppi_nodes {XINA}R Documentation

get_unknown_ppi_nodes

Description

Get proteins with no known interactions within the cluster based on the used protein-protein interaction database source

Usage

get_unknown_ppi_nodes(xina_result, cl)

Arguments

xina_result

A list containing XINA network analysis results. See xina_analysis

cl

the clustering number of XINA clustering results. See xina_clustering

Value

A data frame containing proteins with no known interactions within the cluster based on the used protein-protein interaction database source

Examples

# load XINA example data
data(xina_example)

# load the previously processed XINA analysis results
# if you want to learn how to run 'xina_analysis', please see \link[XINA]{xina_analysis}
data(xina_result_example)

# Extract unknown PPI nodes in the cluster #1
get_unknown_ppi_nodes(xina_result_example, 1)


[Package XINA version 1.0.1 Index]