trajectoryDE {TimeSeriesExperiment} | R Documentation |
Performs differential trajectory testing for timecourse
data using adonis
method.
trajectoryDE(object, dist_method = "euclidean", p_adj_method = "BH", lambda = c(0.5, 0.25), verbose = TRUE, ...)
object |
A |
dist_method |
the name of any method used in vegdist to calculate pairwise distances, "euclidean" by defaults. |
p_adj_method |
a correction method. See details in
|
lambda |
Weights for each lag difference, for time-course data.
Length of |
verbose |
whether code comments should be printed. Default is TRUE. |
... |
other options to |
a data.frame with adonis results for all features.
data("endoderm_small") endoderm_small <- makeTimeSeries(endoderm_small) ## Not run: endoderm_small <- trajectoryDE(endoderm_small) head(differentialExpression(endoderm_small, "trajectory_de")) ## End(Not run)