plotTimeSeriesClusters {TimeSeriesExperiment}R Documentation

Plot (time) series over clusters.

Description

Plots timecourse (aggregated over replicates) feature data faceted by computed clusters and experimental group.

Usage

plotTimeSeriesClusters(object, features = NULL, transparency = 0.5,
  ncol = 4, scales = "free")

Arguments

object

A TimeSeriesExperiment object.

features

A vector of names of selected features to plot.

transparency

transparency of trajectory lines.

ncol

number of columns in the factet plot.

scales

character scalar indecating facet scales, by default "free".

Value

ggplot object

Examples

data("endoderm_small")
endoderm_small <- clusterTimeSeries(endoderm_small)
plotTimeSeriesClusters(endoderm_small)


[Package TimeSeriesExperiment version 1.0.4 Index]