plotTimeSeriesPCA {TimeSeriesExperiment} | R Documentation |
PCA plot for data features, with time-series levels overlayed on top.
plotTimeSeriesPCA(object, axis = c(1, 2), m = 20, n = 20, group.highlight = NULL, linecol = NULL, ...)
object |
A |
axis |
An integer vector indicating principal components to use for plotting, by default 1:2. |
m |
a number of tiles in a grid in the horizontal direction. |
n |
a number of tiles in a grid in the vertical direction. |
group.highlight |
An optional character string indicating the group subset for which the time-course trends should be plotted. By default all time-course trends are plotted for all groups. |
linecol |
a vector indicating the color of the gene profile trend line, different for each group. |
... |
other parameters for the line plots. |
None
data("endoderm_small") endoderm_small <- runPCA(endoderm_small) plotTimeSeriesPCA(endoderm_small)