plot_ES {TFEA.ChIP} | R Documentation |
Function to plot the Enrichment Score of every member of the ChIPseq binding database.
plot_ES(GSEA_result, LFC, plot_title = NULL, specialTF = NULL, TF_colors = NULL, Accession = NULL, TF = NULL)
GSEA_result |
Returned by GSEA_run |
LFC |
Vector with log2(Fold Change) of every gene that has an Entrez ID. Arranged from higher to lower. |
plot_title |
(Optional) Title for the plot |
specialTF |
(Optional) Named vector of TF symbols -as written in the enrichment table- to be highlighted in the plot. The name of each element specifies its color group, i.e.: naming elements HIF1A and HIF1B as 'HIF' to represent them with the same color. |
TF_colors |
(Optional) Colors to highlight TFs chosen in specialTF. |
Accession |
(Optional) restricts plot to the indicated list dataset IDs. |
TF |
(Optional) restricts plot to the indicated list transcription factor names. |
Plotly object with a scatter plot -Enrichment scores- and a heatmap -log2(fold change) bar-.
data('GSEA.result','log2.FC',package = 'TFEA.ChIP') TF.hightlight<-c('STAT1') names(TF.hightlight)<-c('STAT1') col<- c('red') plot_ES(GSEA.result,log2.FC,specialTF = TF.hightlight,TF_colors = col)