mirToRanges {TCGAutils}R Documentation

Convert SummarizedExperiment elements with microRNA to RangedSummarizedExperiment

Description

Convert SummarizedExperiment elements with microRNA to RangedSummarizedExperiment

Usage

mirToRanges(obj, keep = FALSE)

Arguments

obj

A MultiAssayExperiment object obtained from curatedTCGAData

keep

If FALSE (default), remove the SummarizedExperiment objects that have been converted to RangedSummarizedExperiment

Value

a MultiAssayExperiment where any of the original SummarizedExperiment containing gene symbols as rownames have been replaced or supplemented by a RangedSummarizedExperiment for miR that could be mapped to GRanges, and another SummarizedExperiment for miR that could not be mapped to GRanges.

Author(s)

L. Waldron

See Also

symbolsToRanges

Examples

library(curatedTCGAData)

accmae <- curatedTCGAData("ACC", "miRNASeqGene", dry.run = FALSE)

mirToRanges(accmae)

[Package TCGAutils version 1.2.2 Index]