symbolsToRanges {TCGAutils} | R Documentation |
Convert SummarizedExperiment elements with gene symbols to RangedSummarizedExperiment
symbolsToRanges(obj, keep = FALSE)
obj |
A MultiAssayExperiment object obtained from curatedTCGAData |
keep |
If FALSE (default), remove the SummarizedExperiment objects that have been converted to RangedSummarizedExperiment |
Any SummarizedExperiment elements with gene symbols as rownames will have ranges added. Symbols where ranges can't be found are put in a new SummarizedExperiment.
a MultiAssayExperiment where any of the original SummarizedExperiment containing gene symbols as rownames have been replaced or supplemented by a RangedSummarizedExperiment for miR that could be mapped to GRanges, and another SummarizedExperiment for miR that could not be mapped to GRanges.
L. Waldron
mirToRanges
library(MultiAssayExperiment) data(miniACC) symbolsToRanges(miniACC)