mirToRanges {TCGAutils} | R Documentation |
Convert SummarizedExperiment elements with microRNA to RangedSummarizedExperiment
mirToRanges(obj, keep = FALSE)
obj |
A MultiAssayExperiment object obtained from curatedTCGAData |
keep |
If FALSE (default), remove the SummarizedExperiment objects that have been converted to RangedSummarizedExperiment |
a MultiAssayExperiment where any of the original SummarizedExperiment containing gene symbols as rownames have been replaced or supplemented by a RangedSummarizedExperiment for miR that could be mapped to GRanges, and another SummarizedExperiment for miR that could not be mapped to GRanges.
L. Waldron
symbolsToRanges
library(curatedTCGAData) accmae <- curatedTCGAData("ACC", "miRNASeqGene", dry.run = FALSE) mirToRanges(accmae)