SpidermiRanalyze_mirnanet_pharm {SpidermiR} | R Documentation |
SpidermiRanalyze_mirnanet_pharm integrates both miRNA targeting of the gene and the gene-drug interaction from PharmacomiR database in the network
SpidermiRanalyze_mirnanet_pharm(mir_ph, net)
mir_ph |
SpidermiRdownload_pharmacomir output |
net |
a network data (e.g. SpidermiRanalyze_mirna_network or SpidermiRanalyze_mirna_gene_complnet output) |
a dataframe with the integation of network and pharmacomiR data
mir_p <-data.frame(gA=c('hsa-let-7a','CASP3'),gB=c('CASP3','paclitaxel'),stringsAsFactors=FALSE) net_p <-data.frame(gA=c('hsa-let-7a','hsa-miR-300'),gB=c('FOXM1','KPNA4'),stringsAsFactors=FALSE) mol<-SpidermiRanalyze_mirnanet_pharm(mir_ph=mir_p,net=net_p)