exonTestability {SeqGSEA}R Documentation

Check exon testability

Description

Check exon testability, filtering out exons with very few (default: 5) read counts

Usage

exonTestability(RCS, cutoff = 5)

Arguments

RCS

a ReadCountSet object.

cutoff

exons with read counts less than this cutoff are to be marked as untestable.

Value

a ReadCountSet object with slot fData updated.

Author(s)

Xi Wang, xi.wang@newcastle.edu.au

See Also

geneTestability

Examples

data(RCS_example, package="SeqGSEA")
RCS_example <- exonTestability(RCS_example, cutoff=5)
head(fData(RCS_example))

[Package SeqGSEA version 1.22.1 Index]