SGVariantCounts {SGSeq}R Documentation

Splice graph variant counts

Description

Creates an instance of S4 class SGVariantCounts for storing splice variant counts.

Usage

SGVariantCounts(x)

Arguments

x

RangedSummarizedExperiment with SGVariants as rowRanges and assays “variantFreq”, “countsVariant5p”, “countsVariant3p”, “countsEvent5p”, “countsEvent3p”, and optionally “countsVariant5pOr3p”

Value

SGVariantCounts object

Author(s)

Leonard Goldstein

Examples

sgvc <- SGVariantCounts()

[Package SGSeq version 1.16.2 Index]