predictCandidatesInternal {SGSeq}R Documentation

Identify candidate internal exons

Description

Identify candidate internal exons based on previously identified splice sites and regions with sufficient read coverage.

Usage

predictCandidatesInternal(islands, splicesites, frag_coverage, relCov)

Arguments

islands

IRanges of genomic regions with minimal read coverage required for internal exon prediction

splicesites

IRanges of splice sites with metadata columns “type” and “N”

frag_coverage

Rle object with fragment coverage

relCov

Minimum relative coverage required for exon prediction

Value

IRanges of candidate internal exons

Author(s)

Leonard Goldstein


[Package SGSeq version 1.16.2 Index]