bait {RpsiXML} | R Documentation |
The functions return bait/prey UniProt identifier of the given
psimi25Interaction
object.
bait(x,...) prey(x,...) participant(x,...) inhibitor(x,...) pubmedID(x,...) confidenceValue(x,...) neutralComponent(x,...)
x |
An object of |
... |
Other parameters to control the identifier returned, not implemented yet |
The source database identifier is returned.
Jitao David Zhang <jitao_david.zhang@roche.com>, Tony Chiang <tchiang@ebi.ac.uk>
The UniProt database http://www.expasy.uniprot.org/
xmlDir <- system.file("/extdata/psi25files",package="RpsiXML") gridxml <- file.path(xmlDir, "biogrid_200804_test.xml") gridSet <- parsePsimi25Interaction(gridxml, BIOGRID.PSIMI25) interExp <- interactions(gridSet)[[1]] bait(interExp) prey(interExp)