avs.plot1 {RTN} | R Documentation |
This function takes an AVS object and plots results from the VSE and EVSE methods.
avs.plot1(object, what="vse", fname=what, ylab="genomic annotation", xlab="Number of clusters mapping to genomic annotation", breaks="Sturges", maxy=200, pValueCutoff=1e-2, width=8, height=3)
object |
an object of class 'AVS' |
what |
a character value specifying which analysis should be used. Options: "vse" and "evse". |
fname |
a character value specifying the name of output file. |
ylab |
a character value specifying the y-axis label. |
xlab |
a character value specifying the x-axis label. |
breaks |
breaks in the histogram, see |
maxy |
a numeric value specifying the max y-limit. |
pValueCutoff |
a numeric value specifying the cutoff for p-values considered significant. |
width |
a numeric value specifying the width of the graphics region in inches. |
height |
a numeric value specifying the height of the graphics region in inches. |
Mauro Castro
# see 'avs.vse' and 'avs.evse' methods.