BED2txDb {RNAprobR} | R Documentation |
Function to transform BED format file to Bioconductor TranscriptDb object
BED2txDb(input_bed_path)
input_bed_path |
Path to BED file. If 12 column BED provided, function is splice aware. If 6 column BED provided, function assumes no splicing. |
TranscriptDb object
Lukasz Jan Kielpinski, Nikos Sidiropoulos
write(paste(c("chr1", 134212702, 134229870, "ENSMUST00000072177", 0, "+", 134212806, 134228958, 0, 8, "347,121,24,152,66,120,133,1973,", "0,8827,10080,11571,12005,13832,14433,15195,"), collapse = "\t"), file="dummy.bed") BED2txDb("dummy.bed")