RJMCMCNucleosomes-package {RJMCMCNucleosomes} | R Documentation |
This package does nucleosome positioning using informative Multinomial-Dirichlet prior in a t-mixture with reversible jump estimation of nucleosome positions for genome-wide profiling.
Pascal Belleau, Rawane Samb, Astrid DeschĂȘnes, Khader Khadraoui, Lajmi Lakhal and Arnaud Droit
Maintainer: Astrid Deschenes <adeschen@hotmail.com>
rjmcmc
for profiling of nucleosome positions for a
segment
rjmcmcCHR
for profiling of nucleosome positions
for a large region. The function will take care of spliting and
merging.
segmentation
for spliting a GRanges
containing reads in a list of smaller segments for
the rjmcmc
function.
postTreatment
for merging closely positioned
nucleosomes
mergeRDSFiles
for merging nucleosome information
from selected RDS files.
plotNucleosomes
for generating a graph containing
the nucleosome positions and the read coverage.