JSONOutput {PhenStat} | R Documentation |
Wrapper for the model fitting results. Returns model fitting and testing results in a JSON format.
Assumes that modelling results are stored in the PhenTestResult
object
(output from function testDataset
).
JSONOutput(phenTestResult, phenotypeThreshold = 0.01)
phenTestResult |
instance of the |
phenotypeThreshold |
a numerical value defining the threshold to use in classificationTag; default value 0.01 |
Returns a vector with model fitting results in JSON format: model output summary and other values
Natalja Kurbatova
## Not run: # Mixed Model framework file <- system.file("extdata", "test1.csv", package="PhenStat") test <- PhenStat:::PhenList(dataset=read.csv(file,na.strings = '-'), testGenotype="Sparc/Sparc") result <- PhenStat:::testDataset(test, depVariable="Lean.Mass") PhenStat:::JSONOutput(result) # Fishe Exact Test framework file <- system.file("extdata", "test_categorical.csv", package="PhenStat") test2 <- PhenStat:::PhenList(dataset=read.csv(file,na.strings = '-'), testGenotype="Aff3/Aff3") result2 <- PhenStat:::testDataset(test2, depVariable="Thoracic.Processes", method="FE") PhenStat:::JSONOutput(result2) ## End(Not run)