testFinalLRModel {PhenStat} | R Documentation |
Performs diagnostic tests for Logistic Regression model quality of fit. There are no arguments checks assuming that function is called internally from the "finalLRModel" function. Otherwise should be used with precaution.
testFinalLRModel(phenTestResult)
phenTestResult |
instance of the |
Returns a vector with model fitting results
Natalja Kurbatova, Natasha Karp, Jeremy Mason
Karp N, Melvin D, Sanger Mouse Genetics Project, Mott R (2012): Robust and Sensitive Analysis of Mouse Knockout Phenotypes. PLoS ONE 7(12): e52410. doi:10.1371/journal.pone.0052410
West B, Welch K, Galecki A (2007): Linear Mixed Models: A practical guide using statistical software New York: Chapman & Hall/CRC 353 p.
file <- system.file("extdata", "testLR.csv", package="PhenStat") testLR <- PhenStat:::PhenList(dataset=read.csv(file,na.strings = '-'), testGenotype="Mock") testLR2 <- PhenStat:::LRDataset(testLR,"V2") resultLR <- PhenStat:::testDataset(testLR2, depVariable="V2", method="LR") PhenStat:::testFinalLRModel(resultLR)