getHybridNetwork {Path2PPI} | R Documentation |
Get the hybrid network of the previously predicted PPI. The hybrid network consists of all relevant interactions from the reference species, the predicted interactions in the target species and all relevant homologous relationships.
getHybridNetwork(path2ppi, igraph = FALSE)
path2ppi |
An object of the class |
igraph |
Logical; if |
See igraph
argument.
Oliver Philipp MolBI-software@bioinformatik.uni-frankfurt.de
data(ai) #Load test data set ppi <- Path2PPI("Autophagy induction", "Podospora anserina", "5145") ppi <- addReference(ppi, "Homo sapiens", "9606", human.ai.proteins, human.ai.irefindex, pa2human.ai.homologs) ppi <- addReference(ppi, "Saccharomyces cerevisiae (S288c)", "559292", yeast.ai.proteins, yeast.ai.irefindex, pa2yeast.ai.homologs) ppi <- predictPPI(ppi) #Return the hybrid network as data frame hybrid <- getHybridNetwork(ppi) #Return the hybrid network as igraph object hybrid <- getHybridNetwork(ppi,igraph=TRUE)