getPPI {Path2PPI} | R Documentation |
Get the predicted PPI of an Path2PPI
object consisting of each
predicted interaction and protein in the target species.
getPPI(path2ppi, raw=FALSE, igraph=FALSE)
path2ppi |
An object of the class |
raw |
Logical; if |
igraph |
Logical; if |
See igraph
argument.
Oliver Philipp MolBI-software@bioinformatik.uni-frankfurt.de
data(ai) #Load test data set ppi <- Path2PPI("Autophagy induction", "Podospora anserina", "5145") ppi <- addReference(ppi, "Homo sapiens", "9606", human.ai.proteins, human.ai.irefindex, pa2human.ai.homologs) ppi <- addReference(ppi, "Saccharomyces cerevisiae (S288c)", "559292", yeast.ai.proteins, yeast.ai.irefindex, pa2yeast.ai.homologs) ppi <- predictPPI(ppi) #Get the predicted PPI as data frame. network <- getPPI(ppi) #Get the detailed predicted PPI as data frame. network.raw <- getPPI(ppi,raw=TRUE)