GenomicAnnotations2reference_positions {PREDA} | R Documentation |
extract reference positions from the GenomicAnnotations
Description
extract from the GenomicAnnotations object a vector containing a vector with reference positions
Usage
# GenomicAnnotations2reference_positions(.Object,
# reference_position_type=c("start", "end", "median", "strand.start", "strand.end"),
# withnames=TRUE)
GenomicAnnotations2reference_positions(.Object, ...)
Arguments
.Object |
Object of class GenomicAnnotations
|
... |
See below
- reference_position_type:
-
Specify which genomic coordinate must be used as reference
position for PREDA analysis. Possible values are "start", "end",
"median", "strand.start" or "strand.end".
"strand.start" is strand specific start: i.e. start on positive strand
but end on negative strand. "strand.end" is strand specific end.
- withnames:
-
Logical, if TRUE the "ids" slot content is used as names for the output vector
|
Value
A numeric vector with the selected reference positions.
[Package
PREDA version 1.28.0
Index]