PREDAResults2GenomicRegions {PREDA} | R Documentation |
identify significant genomic regions from a PREDAResults object
# PREDAResults2GenomicRegions(.Object, qval.threshold=0.05, # use.referencePositions=TRUE, smoothStatistic.tail=NULL, # smoothStatistic.threshold=NULL) PREDAResults2GenomicRegions(.Object, ...)
.Object |
Object of class PREDAResults or PREDADataAndResults |
... |
See below
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A list og genomic regions objects is returned: one GenomicRegions object for each analysis in the input PREDAresults.
A NULL element is included in the output list whenever no siginifcant regions are identified.
A list of genomic regions objects
Francesco Ferrari
## Not run: require(PREDAsampledata) data(GEanalysisResults) genomic_regions_UP<-PREDAResults2GenomicRegions(GEanalysisResults , qval.threshold=0.05, smoothStatistic.tail="upper", smoothStatistic.threshold=0.5) ## End(Not run)