OutriderDataSet-class {OUTRIDER} | R Documentation |
The OutriderDataSet class is designed to store the whole
OUTRIDER data set needed for an analysis. It is a subclass of
RangedSummarizedExperiment
. All calculated values and results are
stored as assays or as annotation in the mcols structure provided by the
RangedSummarizedExperiment
class.
OutriderDataSet(se, countData, colData, ...)
se |
A RangedSummarizedExperiment object or any object which inherits from it and contains a count matrix as the first element in the assay list. |
countData |
A simple count matrix. If dim names are provided, they have
to be unique. This is only used if no |
colData |
Additional to the count data a |
... |
Further arguments can be passed to
|
An OutriderDataSet object.
Christian Mertes mertes@in.tum.de, Felix Brechtmann brechtma@in.tum.de
ods <- makeExampleOutriderDataSet() ods ods <- makeExampleOutriderDataSet(dataset="Kremer") ods