intersect {OMICsPCA} | R Documentation |
intersects a factor file and an annotation file
intersect(fact, anno, ...)
fact |
Full path of the directory containing only the bed (.bed) files corresponding to several cell lines of the specified factor. |
anno |
Full path of the annotation file (e.g. gene, TSS, exon etc.) |
... |
additional arguments received from "prepareDataset()" and suppliet to "R_bedtools_intersect()" |
A list containing the intersections of the files (paths of which are supplied throgh the arguments).
Subhadeep Das
anno <- system.file("extdata/annotation2/TSS_groups.bed", package = "OMICsPCAdata") fact <- system.file("extdata/factors2/demofactor", package = "OMICsPCAdata") Cells <- intersect(fact = fact, anno = anno) Cells