generateStatsReport {NormalyzerDE}R Documentation

Generate full output report plot document. Plots p-value histograms for each contrast in the NormalyzerStatistics instance and writes these to a PDF report.

Description

Generate full output report plot document. Plots p-value histograms for each contrast in the NormalyzerStatistics instance and writes these to a PDF report.

Usage

generateStatsReport(nst, jobName, jobDir, plotRows = 3, plotCols = 4)

Arguments

nst

NormalyzerDE statistics object.

jobName

Name of processing run.

jobDir

Path to output directory.

plotRows

Number of plot rows.

plotCols

Number of plot columns.

Value

None

Examples

data(example_stat_summarized_experiment)
statObj <- NormalyzerStatistics(example_stat_summarized_experiment)
statObj <- calculateContrasts(statObj, comparisons=c("1-2", "2-3"), 
  condCol="group", type="limma")
outputDir <- tempdir()
generateStatsReport(statObj, "jobName", outputDir)

[Package NormalyzerDE version 1.0.0 Index]