generateStatsReport {NormalyzerDE} | R Documentation |
Generate full output report plot document. Plots p-value histograms for each contrast in the NormalyzerStatistics instance and writes these to a PDF report.
generateStatsReport(nst, jobName, jobDir, plotRows = 3, plotCols = 4)
nst |
NormalyzerDE statistics object. |
jobName |
Name of processing run. |
jobDir |
Path to output directory. |
plotRows |
Number of plot rows. |
plotCols |
Number of plot columns. |
None
data(example_stat_summarized_experiment) statObj <- NormalyzerStatistics(example_stat_summarized_experiment) statObj <- calculateContrasts(statObj, comparisons=c("1-2", "2-3"), condCol="group", type="limma") outputDir <- tempdir() generateStatsReport(statObj, "jobName", outputDir)