NBSpliceRes-initialize {NBSplice} | R Documentation |
initialize
creates an NBSpliceRes object
## S4 method for signature 'NBSpliceRes' initialize(.Object, results, lowExpIndex, contrast, dispersion)
.Object |
NBSpliceRes class object. |
results |
Data.frame with NBTest results of expressed isoforms. |
lowExpIndex |
Numeric indicating the positions of low expressed isoforms. |
contrast |
Character indicating the contrast used for NBTest. |
dispersion |
Numeric with the estimated gene dispersions. |
NBSpliceRes object.
see full example in NBSpliceRes-class
Gabriela A. Merino merino.gabriela33@gmail.com and Elmer A. Fernandez efernandez@bdmg.com.ar
Other NBSpliceRes: GetDSGenes
,
GetDSResults
, GetGeneResults
,
NBSpliceRes-class
,
NBSpliceRes
, myDSResults
,
plotGeneResults
,
plotRatiosDisp
, plotVolcano
data(myDSResults, package="NBSplice") myResults<-results(myDSResults, filter=FALSE) myLowExpIdx<-lowExpIndex(myDSResults) myContrast<-contrast(myDSResults) myNewDSResults<-NBSpliceRes(myResults, myLowExpIdx, myContrast)