Preprocess_MAdata_Normal {MethylMix}R Documentation

The Preprocess_MAdata_Normal function

Description

Internal. Pre-process gene expression data for normal samples.

Usage

Preprocess_MAdata_Normal(CancerSite, Directory, File,
  MissingValueThresholdGene = 0.3, MissingValueThresholdSample = 0.1)

Arguments

CancerSite

TCGA code for the cancer site.

Directory

Directory.

File

File.

MissingValueThresholdGene

threshold for missing values per gene. Genes with a percentage of NAs greater than this threshold are removed. Default is 0.3.

MissingValueThresholdSample

threshold for missing values per sample. Samples with a percentage of NAs greater than this threshold are removed. Default is 0.1.

Value

The data matrix.


[Package MethylMix version 2.12.0 Index]