labelSummary {MetaCyto} | R Documentation |
A function that summarizes the labels (cell populations) identified in different cytometry panels.
labelSummary(allData, minStudy = 2)
allData |
A table containing the summary statistics of cell populations. Often is the output of the function "collectData". |
minStudy |
Minimum number of cytometry panels a label should appear in. Set it >1 to find cell populations identified in more than 1 cytometry panel for meta-analysis. |
A data frame summarizing the labels identified in different cytometry panels.
fn=system.file("extdata","",package="MetaCyto") files=list.files(fn,pattern="cluster_stats_in_each_sample", recursive=TRUE,full.names=TRUE) fcs_stats=collectData(files,longform=TRUE) label_summary = labelSummary(allData=fcs_stats,minStudy=2)