plot.MassArrayData {MassArray} | R Documentation |
Function to generate graphical output for methylation data in a MassArrayData
object
## S3 method for class 'MassArrayData' plot(x, ..., collapse = TRUE, bars = TRUE, scale = TRUE, sequence = TRUE, labels = TRUE, colors = TRUE, main = position(x), width = 1.5)
x |
Object of class |
... |
Other arguments to plot, currently not supported at this time |
collapse |
Logical specifying whether or not to combine samples by unique |
bars |
Logical specifying whether or not to display error bars. If |
scale |
Logical specifying whether or not to keep the x axis to scale. If |
sequence |
Logical specifying whether or not to display the nucleotide sequence for the amplicon |
labels |
Logical specifying whether or not to display data labels |
colors |
Logical specifying whether or not to plot in color. If |
main |
Label/title for overall plot (default is |
width |
Numerical value specifying the display width to use for each methylation value; number corresponds to the number of base pairs to include in both directions from the methylation position (default is |
Reid F. Thompson (rthompso@aecom.yu.edu), John M. Greally (jgreally@aecom.yu.edu)
See Also MassArrayData
data(MassArray.example.data) plot(MassArray.example.data,collapse=FALSE,bars=FALSE,scale=FALSE)