test.pairwise {MSstatsTMT} | R Documentation |
It is the output of groupComparisonTMT function, which is the result of group comparions with the output of proteinSummarization function. It should include the columns as below. The variables are as follows:
test.pairwise
A data frame with 60 rows and 7 variables.
Protein : Protein ID
Label: Label of the pairwise comparision or contrast
log2FC: Log2 fold change
SE: Standard error of the comparsion of contrast results
DF: Degree of freedom
pvalue: Value of p statistic of the test
adj.pvalue: adjusted p value
head(test.pairwise)