ModuleFrequency {MODA}R Documentation

Statistics of all conditions

Description

Statistics of all conditions. To highlight conserved or condition-specific by counting how frequent each module is lablelled as which, and then visualize the frequency by bar plot.

Usage

ModuleFrequency(ResultFolder, intModules, conditionNames, legendNames,
  indicator)

Arguments

ResultFolder

where to store results

intModules

how many modules in the background network

conditionNames

a character vector, each of them is the name

legendNames

a character vector, each of them is the condition name showing up in the frequency barplot of condition. Or just single name

indicator

identifier of current profile, served as a tag in name

Value

None

Author(s)

Dong Li, dxl466@cs.bham.ac.uk

See Also

WeightedModulePartitionHierarchical, WeightedModulePartitionLouvain, WeightedModulePartitionSpectral, WeightedModulePartitionAmoutain, CompareAllNets


[Package MODA version 1.8.0 Index]