EnrichedView {MAGeCKFlute}R Documentation

View enriched terms

Description

Grid plot for enriched terms

Usage

EnrichedView(enrichment, main = NULL, color = "#3f90f7",
  termNum = 15, charLength = 40, filename = NULL, width = 7,
  height = 4, ...)

Arguments

enrichment

A data frame of enrichment result, with columns of ID, Description, p.adjust and Count.

main

Same as 'title' in 'plot'.

color

Color of nodes.

termNum

Integer, specifying number of top enriched terms to show.

charLength

Integer, specifying max length of enriched term name to show as coordinate lab.

filename

Figure file name to create on disk. Default filename="NULL", which means no output.

width

As in ggsave.

height

As in ggsave.

...

Other available parameters in ggsave.

Value

An object created by ggplot, which can be assigned and further customized.

Author(s)

Feizhen Wu

See Also

KeggPathwayView

EnrichedGSEView

Examples

data(geneList, package = "DOSE")
enrichRes <- enrich.HGT(geneList[1:100])
EnrichedView(enrichment=enrichRes@result)

[Package MAGeCKFlute version 1.2.3 Index]