ViolinView {MAGeCKFlute} | R Documentation |
Plots the violin of beta scores in Control and Treatment samples.
ViolinView(beta, samples = NULL, main = NULL, ylab = "Beta Score", filename = NULL, width = 5, height = 4, ...)
beta |
Data frame, , including |
samples |
Character, specifying the name of samples to be compared. |
main |
As in 'plot'. |
ylab |
As in 'plot'. |
filename |
Figure file name to create on disk. Default filename="NULL", which means don't save the figure on disk. |
width |
As in ggsave. |
height |
As in ggsave. |
... |
Other available parameters in function 'ggsave'. |
An object created by ggplot
, which can be assigned and further customized.
Wubing Zhang
data(mle.gene_summary) # Read beta score from gene summary table in MAGeCK MLE results dd = ReadBeta(mle.gene_summary, organism="hsa") ViolinView(dd, samples=c("dmso", "plx")) #or ViolinView(dd[, c("dmso", "plx")])