CellCycleView {MAGeCKFlute} | R Documentation |
Estimate cell cycle time in different samples by linear fitting of beta scores, and plot fitting lines, in which x-axis is control beta score and y-axis is beta score of all samples.
CellCycleView(beta, ctrlname, treatname, main = NULL, filename = NULL, width = 5, height = 4, ...)
beta |
Data frame, which has columns of |
ctrlname |
A character, specifying the names of control samples. |
treatname |
A character, specifying the name of treatment samples. |
main |
As in 'plot'. |
filename |
Figure file name to create on disk. Default filename="NULL", which means no output. |
width |
As in ggsave. |
height |
As in ggsave. |
... |
Other available parameters in ggsave. |
An object created by ggplot
, which can be assigned and further customized.
Wubing Zhang
data(mle.gene_summary) # Read beta score from gene summary table in MAGeCK MLE results dd = ReadBeta(mle.gene_summary, organism="hsa") CellCycleView(dd, ctrlname = "dmso", treatname = "plx")