EnrichedGSEView {MAGeCKFlute} | R Documentation |
Grid plot for enriched terms in GSEA
EnrichedGSEView(enrichment, top = 5, bottom = 5, charLength = 40, main = NULL, filename = NULL, width = 7, height = 4, ...)
enrichment |
A data frame of enrichment result, with columns of ID, Description, p.adjust and NES |
top |
An integer, specifying the number of top enriched terms to show. |
bottom |
An integer, specifying the number of bottom enriched terms to show. |
charLength |
Integer, specifying max length of enriched term name to show as coordinate lab. |
main |
Same as 'title' in 'plot'. |
filename |
Figure file name to create on disk. Default filename="NULL", which means no output. |
width |
As in ggsave. |
height |
As in ggsave. |
... |
Other available parameters in ggsave. |
An object created by ggplot
, which can be assigned and further customized.
Wubing Zhang
## Not run: data(geneList, package = "DOSE") enrichRes = enrich.GSE(geneList, type = "KEGG", organism="hsa") EnrichedGSEView(as.data.frame(enrichRes), main = "GSEA Analysis") ## End(Not run)