IMMAN is specified to retrieve the interlog protein network shared across diverse species. For this aim, first we exceed orthology relationships among sequences from various species by iterating over any pair of input species, and using the Needleman-Wunsch alignment algorithm and a best reciprocal hit strategy to reach the orthologues through all versus all pairwise cross-species alignments. From orthology assignment, we derive Orthologous Protein sets (OPSs), an assortment of clusters of orthologues(maximum one per species) which will conform the nodes of the so-called Interolog Protein Network (IPN).
We exceed n species-specific interlog protein networks from STRING database, where each node maps to a single OPS in the IPN, and distinguish the edges of the outcome IPN by choosing only edges linking nodes in the IPN that also are linked in at least species-specific networks (where ‘k’ is set as a parameter).
A scoring system is used by the alignment process, which can be described as a set of values specified for quantifying the likelihood of one residue that has been substituted by another in an alignment. The scoring systems used by alignment procedure is called a substitution matrix and it can be achieved from statistical analysis of residue substitution data from sets of reputable alignments of highly relevent sequences. Using identityU value which ranges from 0 to 100, user would be able to specialize how the IPNs should be larger or not. As the value of identityU gets higher, the algorithm will find much similar orthologs and vice versa. We used gapOpening and gapExtension arguments to figure numeric values of ortholog proteins. For matching alignments of proteins if we skip a protein, gapOpening argument would be incremented. The smaller the amount of gap, protein alignements are more similar to each other. The score_threshold argument is specified for evaluating the similarity values between two proteins in substitutionMatrix. It differs from 0 to 100, however, the common use ranges from 25 to 30. The transference of interactionn among orthologs of different species called the interlog approach. We used Besthit argument to reach proteins which has the most similarity in all versus all protein alignment. If an interaction was exist between each pair of proteins of OPSs, an edge would be linked in the IPN. The coverage_threshold specifies the number of interactions that are exist among pair of proteins of OPSs. It differs from 1 to number of species. As much as the value of coverage_threshold was high, the final IPN would be more robust and usually smaller. NetworkShrinkage argument determine whether two similar OPSs which have ortholog proteins in common should be merged or not. If it was TRUE the resulting IPN would be smaller.
For using this package, we assume that the “CINNA” package has been properly installed into the R environment. After installations, the “CINNA” package can be loaded via
For illustration, we will read two datasets from different species which can be accessed via:
Then, we have to make a list of dataset species and set their taxanomy IDs.
ProteinLists = list(as.character(Celegance$V1), as.character(FruitFly$V1))
List1_Species_ID = 6239 # taxonomy ID Celegance
List2_Species_ID = 7227 # taxonomy ID FruitFly
Species_IDs = c(List1_Species_ID, List2_Species_ID)To continue, set the parameters to run the analysis. Here is a description of parameters in IMMAN. If you need more information you can refer to the paper.
identityU: Cut off value for selecting proteins whose alignment score is greater or equal than identityU.
substitutionMatrix: Which scoring matrix to be used for alignment setting gapOpening and gapExtension for alignment purposes.
For NetworkShrinkage, coverage, and BestHit refer to paper.
STRINGversion: Indicated which version of STRING database should program search in for the score of PPIs.
Then, we will set the argument values:
identityU = 30
substitutionMatrix = "BLOSUM62"
gapOpening = -8
gapExtension = -8
NetworkShrinkage = FALSE
coverage = 1
BestHit = TRUE
score_threshold = 400
STRINGversion="10"Finally, we can run the IMMAN function:
output = IMMAN(ProteinLists, fileNames=NULL, Species_IDs,
identityU, substitutionMatrix,
gapOpening, gapExtension, BestHit,
coverage, NetworkShrinkage,
score_threshold, STRINGversion,
InputDirectory = getwd())## Step 1/4:Downloading amino acid sequences...## Downloading amino acid sequences of List1## Downloading amino acid sequences of List2## Step 2/4: Alignment...## Align List1 with List2## Step 3/4: Detection in STRING...## Detecting List1 in STRING## Warning in download.file(urlStr, temp): downloaded length 790528 !=
## reported length 792419## Detecting List2 in STRING## Warning in download.file(urlStr, temp): downloaded length 647168 !=
## reported length 648541## Step 4/4: Retrieving String Network...## Retrieving List1## Retrieving List2## Producing IPN...## DONE!
In order to see some particular parts of the result, you can use:
## node1 node2
## 1 OPS0001 OPS0004
## 2 OPS0001 OPS0009
## 3 OPS0001 OPS0019
## 4 OPS0001 OPS0021
## 5 OPS0001 OPS0025
## 6 OPS0001 OPS0027
## 7 OPS0001 OPS0030
## 8 OPS0001 OPS0031
## 9 OPS0001 OPS0036
## 10 OPS0001 OPS0037
## 11 OPS0001 OPS0044
## 12 OPS0001 OPS0049
## 13 OPS0001 OPS0055
## 14 OPS0001 OPS0061
## 15 OPS0002 OPS0023
## 16 OPS0002 OPS0056
## 17 OPS0004 OPS0007
## 18 OPS0004 OPS0009
## 19 OPS0004 OPS0011
## 20 OPS0004 OPS0012
## 21 OPS0004 OPS0017
## 22 OPS0004 OPS0024
## 23 OPS0004 OPS0025
## 24 OPS0004 OPS0042
## 25 OPS0004 OPS0062
## 26 OPS0006 OPS0007
## 27 OPS0006 OPS0008
## 28 OPS0006 OPS0012
## 29 OPS0006 OPS0015
## 30 OPS0006 OPS0016
## 31 OPS0006 OPS0022
## 32 OPS0006 OPS0024
## 33 OPS0006 OPS0025
## 34 OPS0006 OPS0026
## 35 OPS0006 OPS0028
## 36 OPS0006 OPS0029
## 37 OPS0006 OPS0030
## 38 OPS0006 OPS0031
## 39 OPS0006 OPS0034
## 40 OPS0006 OPS0036
## 41 OPS0006 OPS0037
## 42 OPS0006 OPS0038
## 43 OPS0006 OPS0039
## 44 OPS0006 OPS0046
## 45 OPS0006 OPS0047
## 46 OPS0006 OPS0048
## 47 OPS0006 OPS0050
## 48 OPS0006 OPS0051
## 49 OPS0006 OPS0058
## 50 OPS0006 OPS0059
## 51 OPS0006 OPS0062
## 52 OPS0007 OPS0008
## 53 OPS0007 OPS0011
## 54 OPS0007 OPS0012
## 55 OPS0007 OPS0015
## 56 OPS0007 OPS0016
## 57 OPS0007 OPS0018
## 58 OPS0007 OPS0022
## 59 OPS0007 OPS0023
## 60 OPS0007 OPS0024
## 61 OPS0007 OPS0025
## 62 OPS0007 OPS0026
## 63 OPS0007 OPS0028
## 64 OPS0007 OPS0029
## 65 OPS0007 OPS0030
## 66 OPS0007 OPS0031
## 67 OPS0007 OPS0034
## 68 OPS0007 OPS0036
## 69 OPS0007 OPS0037
## 70 OPS0007 OPS0038
## 71 OPS0007 OPS0039
## 72 OPS0007 OPS0047
## 73 OPS0007 OPS0048
## 74 OPS0007 OPS0050
## 75 OPS0007 OPS0051
## 76 OPS0007 OPS0053
## 77 OPS0007 OPS0058
## 78 OPS0007 OPS0059
## 79 OPS0007 OPS0062
## 80 OPS0008 OPS0011
## 81 OPS0008 OPS0012
## 82 OPS0008 OPS0016
## 83 OPS0008 OPS0018
## 84 OPS0008 OPS0022
## 85 OPS0008 OPS0023
## 86 OPS0008 OPS0024
## 87 OPS0008 OPS0025
## 88 OPS0008 OPS0027
## 89 OPS0008 OPS0029
## 90 OPS0008 OPS0031
## 91 OPS0008 OPS0034
## 92 OPS0008 OPS0037
## 93 OPS0008 OPS0038
## 94 OPS0008 OPS0039
## 95 OPS0008 OPS0042
## 96 OPS0008 OPS0048
## 97 OPS0008 OPS0051
## 98 OPS0008 OPS0053
## 99 OPS0008 OPS0059
## 100 OPS0008 OPS0062
## 101 OPS0009 OPS0011
## 102 OPS0009 OPS0017
## 103 OPS0009 OPS0021
## 104 OPS0009 OPS0027
## 105 OPS0009 OPS0032
## 106 OPS0009 OPS0036
## 107 OPS0009 OPS0037
## 108 OPS0009 OPS0042
## 109 OPS0009 OPS0044
## 110 OPS0009 OPS0061
## 111 OPS0010 OPS0046
## 112 OPS0011 OPS0012
## 113 OPS0011 OPS0017
## 114 OPS0011 OPS0022
## 115 OPS0011 OPS0023
## 116 OPS0011 OPS0024
## 117 OPS0011 OPS0025
## 118 OPS0011 OPS0027
## 119 OPS0011 OPS0028
## 120 OPS0011 OPS0029
## 121 OPS0011 OPS0052
## 122 OPS0011 OPS0062
## 123 OPS0012 OPS0013
## 124 OPS0012 OPS0015
## 125 OPS0012 OPS0016
## 126 OPS0012 OPS0018
## 127 OPS0012 OPS0022
## 128 OPS0012 OPS0023
## 129 OPS0012 OPS0024
## 130 OPS0012 OPS0025
## 131 OPS0012 OPS0027
## 132 OPS0012 OPS0028
## 133 OPS0012 OPS0029
## 134 OPS0012 OPS0030
## 135 OPS0012 OPS0031
## 136 OPS0012 OPS0034
## 137 OPS0012 OPS0036
## 138 OPS0012 OPS0037
## 139 OPS0012 OPS0038
## 140 OPS0012 OPS0039
## 141 OPS0012 OPS0042
## 142 OPS0012 OPS0047
## 143 OPS0012 OPS0048
## 144 OPS0012 OPS0050
## 145 OPS0012 OPS0051
## 146 OPS0012 OPS0053
## 147 OPS0012 OPS0058
## 148 OPS0012 OPS0059
## 149 OPS0012 OPS0062
## 150 OPS0015 OPS0016
## 151 OPS0015 OPS0019
## 152 OPS0015 OPS0022
## 153 OPS0015 OPS0025
## 154 OPS0015 OPS0028
## 155 OPS0015 OPS0029
## 156 OPS0015 OPS0030
## 157 OPS0015 OPS0031
## 158 OPS0015 OPS0036
## 159 OPS0015 OPS0037
## 160 OPS0015 OPS0038
## 161 OPS0015 OPS0039
## 162 OPS0015 OPS0047
## 163 OPS0015 OPS0048
## 164 OPS0015 OPS0050
## 165 OPS0015 OPS0051
## 166 OPS0015 OPS0058
## 167 OPS0015 OPS0059
## 168 OPS0016 OPS0022
## 169 OPS0016 OPS0024
## 170 OPS0016 OPS0026
## 171 OPS0016 OPS0028
## 172 OPS0016 OPS0029
## 173 OPS0016 OPS0030
## 174 OPS0016 OPS0031
## 175 OPS0016 OPS0036
## 176 OPS0016 OPS0037
## 177 OPS0016 OPS0038
## 178 OPS0016 OPS0039
## 179 OPS0016 OPS0041
## 180 OPS0016 OPS0047
## 181 OPS0016 OPS0048
## 182 OPS0016 OPS0050
## 183 OPS0016 OPS0051
## 184 OPS0016 OPS0058
## 185 OPS0016 OPS0059
## 186 OPS0016 OPS0062
## 187 OPS0017 OPS0027
## 188 OPS0017 OPS0053
## 189 OPS0017 OPS0062
## 190 OPS0018 OPS0024
## 191 OPS0018 OPS0028
## 192 OPS0018 OPS0029
## 193 OPS0018 OPS0032
## 194 OPS0018 OPS0046
## 195 OPS0018 OPS0052
## 196 OPS0018 OPS0060
## 197 OPS0019 OPS0020
## 198 OPS0019 OPS0025
## 199 OPS0019 OPS0028
## 200 OPS0019 OPS0030
## 201 OPS0019 OPS0036
## 202 OPS0019 OPS0038
## 203 OPS0019 OPS0047
## 204 OPS0019 OPS0050
## 205 OPS0019 OPS0058
## 206 OPS0019 OPS0062
## 207 OPS0020 OPS0049
## 208 OPS0021 OPS0025
## 209 OPS0021 OPS0030
## 210 OPS0021 OPS0031
## 211 OPS0021 OPS0036
## 212 OPS0021 OPS0037
## 213 OPS0021 OPS0041
## 214 OPS0021 OPS0044
## 215 OPS0021 OPS0049
## 216 OPS0021 OPS0055
## 217 OPS0021 OPS0061
## 218 OPS0022 OPS0023
## 219 OPS0022 OPS0025
## 220 OPS0022 OPS0026
## 221 OPS0022 OPS0027
## 222 OPS0022 OPS0028
## 223 OPS0022 OPS0029
## 224 OPS0022 OPS0030
## 225 OPS0022 OPS0031
## 226 OPS0022 OPS0036
## 227 OPS0022 OPS0037
## 228 OPS0022 OPS0038
## 229 OPS0022 OPS0039
## 230 OPS0022 OPS0047
## 231 OPS0022 OPS0048
## 232 OPS0022 OPS0050
## 233 OPS0022 OPS0051
## 234 OPS0022 OPS0057
## 235 OPS0022 OPS0058
## 236 OPS0022 OPS0059
## 237 OPS0022 OPS0062
## 238 OPS0023 OPS0024
## 239 OPS0023 OPS0025
## 240 OPS0023 OPS0034
## 241 OPS0023 OPS0045
## 242 OPS0023 OPS0046
## 243 OPS0023 OPS0053
## 244 OPS0023 OPS0062
## 245 OPS0024 OPS0025
## 246 OPS0024 OPS0029
## 247 OPS0024 OPS0031
## 248 OPS0024 OPS0034
## 249 OPS0024 OPS0037
## 250 OPS0024 OPS0039
## 251 OPS0024 OPS0048
## 252 OPS0024 OPS0051
## 253 OPS0024 OPS0053
## 254 OPS0024 OPS0059
## 255 OPS0024 OPS0062
## 256 OPS0025 OPS0028
## 257 OPS0025 OPS0030
## 258 OPS0025 OPS0031
## 259 OPS0025 OPS0036
## 260 OPS0025 OPS0038
## 261 OPS0025 OPS0047
## 262 OPS0025 OPS0048
## 263 OPS0025 OPS0050
## 264 OPS0025 OPS0053
## 265 OPS0025 OPS0058
## 266 OPS0025 OPS0062
## 267 OPS0026 OPS0029
## 268 OPS0026 OPS0031
## 269 OPS0026 OPS0037
## 270 OPS0026 OPS0039
## 271 OPS0026 OPS0048
## 272 OPS0026 OPS0051
## 273 OPS0026 OPS0059
## 274 OPS0027 OPS0032
## 275 OPS0027 OPS0042
## 276 OPS0028 OPS0029
## 277 OPS0028 OPS0030
## 278 OPS0028 OPS0031
## 279 OPS0028 OPS0036
## 280 OPS0028 OPS0037
## 281 OPS0028 OPS0038
## 282 OPS0028 OPS0039
## 283 OPS0028 OPS0047
## 284 OPS0028 OPS0048
## 285 OPS0028 OPS0050
## 286 OPS0028 OPS0051
## 287 OPS0028 OPS0058
## 288 OPS0028 OPS0059
## 289 OPS0028 OPS0060
## 290 OPS0029 OPS0030
## 291 OPS0029 OPS0031
## 292 OPS0029 OPS0036
## 293 OPS0029 OPS0037
## 294 OPS0029 OPS0038
## 295 OPS0029 OPS0039
## 296 OPS0029 OPS0041
## 297 OPS0029 OPS0047
## 298 OPS0029 OPS0048
## 299 OPS0029 OPS0050
## 300 OPS0029 OPS0051
## 301 OPS0029 OPS0058
## 302 OPS0029 OPS0059
## 303 OPS0029 OPS0060
## 304 OPS0029 OPS0062
## 305 OPS0030 OPS0031
## 306 OPS0030 OPS0036
## 307 OPS0030 OPS0037
## 308 OPS0030 OPS0038
## 309 OPS0030 OPS0039
## 310 OPS0030 OPS0044
## 311 OPS0030 OPS0047
## 312 OPS0030 OPS0048
## 313 OPS0030 OPS0049
## 314 OPS0030 OPS0050
## 315 OPS0030 OPS0051
## 316 OPS0030 OPS0055
## 317 OPS0030 OPS0058
## 318 OPS0030 OPS0059
## 319 OPS0030 OPS0061
## 320 OPS0031 OPS0036
## 321 OPS0031 OPS0037
## 322 OPS0031 OPS0038
## 323 OPS0031 OPS0039
## 324 OPS0031 OPS0041
## 325 OPS0031 OPS0044
## 326 OPS0031 OPS0047
## 327 OPS0031 OPS0048
## 328 OPS0031 OPS0049
## 329 OPS0031 OPS0050
## 330 OPS0031 OPS0051
## 331 OPS0031 OPS0055
## 332 OPS0031 OPS0058
## 333 OPS0031 OPS0059
## 334 OPS0031 OPS0061
## 335 OPS0031 OPS0062
## 336 OPS0032 OPS0033
## 337 OPS0032 OPS0052
## 338 OPS0032 OPS0062
## 339 OPS0033 OPS0046
## 340 OPS0033 OPS0056
## 341 OPS0034 OPS0053
## 342 OPS0034 OPS0062
## 343 OPS0035 OPS0062
## 344 OPS0036 OPS0037
## 345 OPS0036 OPS0038
## 346 OPS0036 OPS0039
## 347 OPS0036 OPS0044
## 348 OPS0036 OPS0047
## 349 OPS0036 OPS0048
## 350 OPS0036 OPS0049
## 351 OPS0036 OPS0050
## 352 OPS0036 OPS0051
## 353 OPS0036 OPS0055
## 354 OPS0036 OPS0058
## 355 OPS0036 OPS0059
## 356 OPS0036 OPS0061
## 357 OPS0037 OPS0038
## 358 OPS0037 OPS0039
## 359 OPS0037 OPS0041
## 360 OPS0037 OPS0044
## 361 OPS0037 OPS0047
## 362 OPS0037 OPS0048
## 363 OPS0037 OPS0049
## 364 OPS0037 OPS0050
## 365 OPS0037 OPS0051
## 366 OPS0037 OPS0055
## 367 OPS0037 OPS0058
## 368 OPS0037 OPS0059
## 369 OPS0037 OPS0061
## 370 OPS0037 OPS0062
## 371 OPS0038 OPS0039
## 372 OPS0038 OPS0042
## 373 OPS0038 OPS0047
## 374 OPS0038 OPS0048
## 375 OPS0038 OPS0050
## 376 OPS0038 OPS0051
## 377 OPS0038 OPS0055
## 378 OPS0038 OPS0057
## 379 OPS0038 OPS0058
## 380 OPS0038 OPS0059
## 381 OPS0038 OPS0063
## 382 OPS0039 OPS0041
## 383 OPS0039 OPS0042
## 384 OPS0039 OPS0047
## 385 OPS0039 OPS0048
## 386 OPS0039 OPS0050
## 387 OPS0039 OPS0051
## 388 OPS0039 OPS0055
## 389 OPS0039 OPS0057
## 390 OPS0039 OPS0058
## 391 OPS0039 OPS0059
## 392 OPS0039 OPS0062
## 393 OPS0039 OPS0063
## 394 OPS0040 OPS0052
## 395 OPS0041 OPS0048
## 396 OPS0041 OPS0050
## 397 OPS0041 OPS0051
## 398 OPS0041 OPS0056
## 399 OPS0041 OPS0059
## 400 OPS0042 OPS0058
## 401 OPS0042 OPS0059
## 402 OPS0044 OPS0049
## 403 OPS0044 OPS0055
## 404 OPS0044 OPS0061
## 405 OPS0045 OPS0046
## 406 OPS0045 OPS0062
## 407 OPS0046 OPS0053
## 408 OPS0046 OPS0060
## 409 OPS0047 OPS0048
## 410 OPS0047 OPS0050
## 411 OPS0047 OPS0051
## 412 OPS0047 OPS0058
## 413 OPS0047 OPS0059
## 414 OPS0047 OPS0061
## 415 OPS0047 OPS0063
## 416 OPS0048 OPS0050
## 417 OPS0048 OPS0051
## 418 OPS0048 OPS0058
## 419 OPS0048 OPS0059
## 420 OPS0048 OPS0061
## 421 OPS0048 OPS0062
## 422 OPS0048 OPS0063
## 423 OPS0049 OPS0055
## 424 OPS0049 OPS0057
## 425 OPS0049 OPS0061
## 426 OPS0050 OPS0051
## 427 OPS0050 OPS0056
## 428 OPS0050 OPS0058
## 429 OPS0050 OPS0059
## 430 OPS0051 OPS0056
## 431 OPS0051 OPS0058
## 432 OPS0051 OPS0059
## 433 OPS0051 OPS0062
## 434 OPS0052 OPS0053
## 435 OPS0052 OPS0060
## 436 OPS0053 OPS0062
## 437 OPS0054 OPS0055
## 438 OPS0054 OPS0057
## 439 OPS0055 OPS0057
## 440 OPS0055 OPS0061
## 441 OPS0057 OPS0061
## 442 OPS0058 OPS0059
## 443 OPS0058 OPS0062
## 444 OPS0058 OPS0063
## 445 OPS0059 OPS0062
## 446 OPS0059 OPS0063## node1 node2 OPSLabel
## 1 6239.C18E9.6 7227.FBpp0085338 OPS0001
## 2 6239.R07B7.5 7227.FBpp0088005 OPS0002
## 3 6239.Y67H2A.4a 7227.FBpp0111941 OPS0003
## 4 6239.Y22D7AL.5a.2 7227.FBpp0073290 OPS0004
## 5 6239.R07G3.5.2 7227.FBpp0070350 OPS0005
## 6 6239.MTCE.31 7227.FBpp0100177 OPS0006
## 7 6239.F42A8.2.1 7227.FBpp0085489 OPS0007
## 8 6239.H28O16.1a 7227.FBpp0071794 OPS0008
## 9 6239.C34C12.8.1 7227.FBpp0086795 OPS0009
## 10 6239.ZK370.5.1 7227.FBpp0111805 OPS0010
## 11 6239.F10D11.1.2 7227.FBpp0086226 OPS0011
## 12 6239.C34E10.6.2 7227.FBpp0305828 OPS0012
## 13 6239.M01F1.3.3 7227.FBpp0288705 OPS0013
## 14 6239.Y47G6A.8 7227.FBpp0086223 OPS0014
## 15 6239.E04A4.7.3 7227.FBpp0083137 OPS0015
## 16 6239.MTCE.21 7227.FBpp0083137 OPS0016
## 17 6239.C34B2.6.1 7227.FBpp0271918 OPS0017
## 18 6239.F13D12.4a.2 7227.FBpp0070087 OPS0018
## 19 6239.ZK1248.14 7227.FBpp0070873 OPS0019
## 20 6239.K08F11.5.2 7227.FBpp0302814 OPS0020
## 21 6239.C47G2.3.1 7227.FBpp0083078 OPS0021
## 22 6239.Y37D8A.14.2 7227.FBpp0081947 OPS0022
## 23 6239.C05G5.4.1 7227.FBpp0073010 OPS0023
## 24 6239.C03G5.1.2 7227.FBpp0085736 OPS0024
## 25 6239.R05G6.7.2 7227.FBpp0079772 OPS0025
## 26 6239.H06I04.2 7227.FBpp0076607 OPS0026
## 27 6239.C29E4.8.1 7227.FBpp0072072 OPS0027
## 28 6239.E04A4.7.3 7227.FBpp0086748 OPS0028
## 29 6239.MTCE.21 7227.FBpp0086748 OPS0029
## 30 6239.E04A4.7.3 7227.FBpp0086555 OPS0030
## 31 6239.MTCE.21 7227.FBpp0086555 OPS0031
## 32 6239.B0250.5 7227.FBpp0085821 OPS0032
## 33 6239.F02A9.4a 7227.FBpp0085460 OPS0033
## 34 6239.ZK836.2a 7227.FBpp0085117 OPS0034
## 35 6239.W02B12.9.2 7227.FBpp0084635 OPS0035
## 36 6239.E04A4.7.3 7227.FBpp0082657 OPS0036
## 37 6239.MTCE.21 7227.FBpp0082657 OPS0037
## 38 6239.E04A4.7.3 7227.FBpp0082412 OPS0038
## 39 6239.MTCE.21 7227.FBpp0082412 OPS0039
## 40 6239.ZK1128.1.2 7227.FBpp0081828 OPS0040
## 41 6239.F57B9.4b.1 7227.FBpp0081347 OPS0041
## 42 6239.F29C12.4.2 7227.FBpp0079041 OPS0042
## 43 6239.C08F8.2a 7227.FBpp0271517 OPS0043
## 44 6239.E04A4.5.2 7227.FBpp0078430 OPS0044
## 45 6239.F49E8.5.1 7227.FBpp0077414 OPS0045
## 46 6239.T08G2.3.1 7227.FBpp0076520 OPS0046
## 47 6239.E04A4.7.3 7227.FBpp0291478 OPS0047
## 48 6239.MTCE.21 7227.FBpp0291478 OPS0048
## 49 6239.DY3.1 7227.FBpp0075820 OPS0049
## 50 6239.E04A4.7.3 7227.FBpp0298344 OPS0050
## 51 6239.MTCE.21 7227.FBpp0298344 OPS0051
## 52 6239.C16A3.10a.1 7227.FBpp0074729 OPS0052
## 53 6239.F43G9.1.2 7227.FBpp0300338 OPS0053
## 54 6239.Y55F3AM.1.1 7227.FBpp0073762 OPS0054
## 55 6239.C06G3.11a 7227.FBpp0073606 OPS0055
## 56 6239.ZK652.9 7227.FBpp0073568 OPS0056
## 57 6239.T08B2.8.2 7227.FBpp0303832 OPS0057
## 58 6239.E04A4.7.3 7227.FBpp0072334 OPS0058
## 59 6239.MTCE.21 7227.FBpp0072334 OPS0059
## 60 6239.Y38F1A.6.6 7227.FBpp0071759 OPS0060
## 61 6239.Y66D12A.22.2 7227.FBpp0071593 OPS0061
## 62 6239.T20G5.2.2 7227.FBpp0070871 OPS0062
## 63 6239.B0035.16.1 7227.FBpp0070168 OPS0063## [[1]]
## from to
## 1 6239.C03G5.1.2 6239.C05G5.4.1
## 2 6239.B0250.5 6239.C16A3.10a.1
## 3 6239.C06G3.11a 6239.C18E9.6
## 4 6239.C18E9.6 6239.C29E4.8.1
## 5 6239.C29E4.8.1 6239.C34B2.6.1
## 6 6239.B0250.5 6239.C34C12.8.1
## 7 6239.C18E9.6 6239.C34C12.8.1
## 8 6239.C29E4.8.1 6239.C34C12.8.1
## 9 6239.C34B2.6.1 6239.C34C12.8.1
## 10 6239.C03G5.1.2 6239.C34E10.6.2
## 11 6239.C05G5.4.1 6239.C34E10.6.2
## 12 6239.C29E4.8.1 6239.C34E10.6.2
## 13 6239.C06G3.11a 6239.C47G2.3.1
## 14 6239.C18E9.6 6239.C47G2.3.1
## 15 6239.C34C12.8.1 6239.C47G2.3.1
## 16 6239.C06G3.11a 6239.DY3.1
## 17 6239.C18E9.6 6239.DY3.1
## 18 6239.C47G2.3.1 6239.DY3.1
## 19 6239.C06G3.11a 6239.E04A4.5.2
## 20 6239.C18E9.6 6239.E04A4.5.2
## 21 6239.C34C12.8.1 6239.E04A4.5.2
## 22 6239.C47G2.3.1 6239.E04A4.5.2
## 23 6239.DY3.1 6239.E04A4.5.2
## 24 6239.C34E10.6.2 6239.E04A4.7.3
## 25 6239.C16A3.10a.1 6239.F10D11.1.2
## 26 6239.C34B2.6.1 6239.F10D11.1.2
## 27 6239.C34C12.8.1 6239.F10D11.1.2
## 28 6239.B0250.5 6239.F13D12.4a.2
## 29 6239.C03G5.1.2 6239.F13D12.4a.2
## 30 6239.C34E10.6.2 6239.F13D12.4a.2
## 31 6239.C29E4.8.1 6239.F29C12.4.2
## 32 6239.C34C12.8.1 6239.F29C12.4.2
## 33 6239.C34E10.6.2 6239.F29C12.4.2
## 34 6239.C03G5.1.2 6239.F42A8.2.1
## 35 6239.C05G5.4.1 6239.F42A8.2.1
## 36 6239.C34E10.6.2 6239.F42A8.2.1
## 37 6239.E04A4.7.3 6239.F42A8.2.1
## 38 6239.F10D11.1.2 6239.F42A8.2.1
## 39 6239.F13D12.4a.2 6239.F42A8.2.1
## 40 6239.C03G5.1.2 6239.F43G9.1.2
## 41 6239.C05G5.4.1 6239.F43G9.1.2
## 42 6239.C16A3.10a.1 6239.F43G9.1.2
## 43 6239.C34B2.6.1 6239.F43G9.1.2
## 44 6239.C34E10.6.2 6239.F43G9.1.2
## 45 6239.F42A8.2.1 6239.F43G9.1.2
## 46 6239.C47G2.3.1 6239.F57B9.4b.1
## 47 6239.C03G5.1.2 6239.H28O16.1a
## 48 6239.C05G5.4.1 6239.H28O16.1a
## 49 6239.C29E4.8.1 6239.H28O16.1a
## 50 6239.C34E10.6.2 6239.H28O16.1a
## 51 6239.F10D11.1.2 6239.H28O16.1a
## 52 6239.F29C12.4.2 6239.H28O16.1a
## 53 6239.F42A8.2.1 6239.H28O16.1a
## 54 6239.F43G9.1.2 6239.H28O16.1a
## 55 6239.C34E10.6.2 6239.M01F1.3.3
## 56 6239.C03G5.1.2 6239.MTCE.21
## 57 6239.C34E10.6.2 6239.MTCE.21
## 58 6239.E04A4.7.3 6239.MTCE.21
## 59 6239.F42A8.2.1 6239.MTCE.21
## 60 6239.F57B9.4b.1 6239.MTCE.21
## 61 6239.H06I04.2 6239.MTCE.21
## 62 6239.H28O16.1a 6239.MTCE.21
## 63 6239.C03G5.1.2 6239.MTCE.31
## 64 6239.C34E10.6.2 6239.MTCE.31
## 65 6239.E04A4.7.3 6239.MTCE.31
## 66 6239.F42A8.2.1 6239.MTCE.31
## 67 6239.H06I04.2 6239.MTCE.31
## 68 6239.H28O16.1a 6239.MTCE.31
## 69 6239.MTCE.21 6239.MTCE.31
## 70 6239.C03G5.1.2 6239.R05G6.7.2
## 71 6239.C18E9.6 6239.R05G6.7.2
## 72 6239.C34E10.6.2 6239.R05G6.7.2
## 73 6239.C47G2.3.1 6239.R05G6.7.2
## 74 6239.E04A4.7.3 6239.R05G6.7.2
## 75 6239.F42A8.2.1 6239.R05G6.7.2
## 76 6239.H28O16.1a 6239.R05G6.7.2
## 77 6239.MTCE.31 6239.R05G6.7.2
## 78 6239.C05G5.4.1 6239.R07B7.5
## 79 6239.C06G3.11a 6239.T08B2.8.2
## 80 6239.DY3.1 6239.T08B2.8.2
## 81 6239.C05G5.4.1 6239.T08G2.3.1
## 82 6239.F02A9.4a 6239.T08G2.3.1
## 83 6239.F43G9.1.2 6239.T08G2.3.1
## 84 6239.C03G5.1.2 6239.T20G5.2.2
## 85 6239.C05G5.4.1 6239.T20G5.2.2
## 86 6239.C34B2.6.1 6239.T20G5.2.2
## 87 6239.C34E10.6.2 6239.T20G5.2.2
## 88 6239.F10D11.1.2 6239.T20G5.2.2
## 89 6239.F42A8.2.1 6239.T20G5.2.2
## 90 6239.F43G9.1.2 6239.T20G5.2.2
## 91 6239.F49E8.5.1 6239.T20G5.2.2
## 92 6239.H28O16.1a 6239.T20G5.2.2
## 93 6239.MTCE.21 6239.T20G5.2.2
## 94 6239.R05G6.7.2 6239.T20G5.2.2
## 95 6239.T20G5.2.2 6239.W02B12.9.2
## 96 6239.C03G5.1.2 6239.Y22D7AL.5a.2
## 97 6239.C18E9.6 6239.Y22D7AL.5a.2
## 98 6239.C34B2.6.1 6239.Y22D7AL.5a.2
## 99 6239.C34C12.8.1 6239.Y22D7AL.5a.2
## 100 6239.C34E10.6.2 6239.Y22D7AL.5a.2
## 101 6239.F10D11.1.2 6239.Y22D7AL.5a.2
## 102 6239.F29C12.4.2 6239.Y22D7AL.5a.2
## 103 6239.F42A8.2.1 6239.Y22D7AL.5a.2
## 104 6239.R05G6.7.2 6239.Y22D7AL.5a.2
## 105 6239.T20G5.2.2 6239.Y22D7AL.5a.2
## 106 6239.C34E10.6.2 6239.Y37D8A.14.2
## 107 6239.E04A4.7.3 6239.Y37D8A.14.2
## 108 6239.F10D11.1.2 6239.Y37D8A.14.2
## 109 6239.F42A8.2.1 6239.Y37D8A.14.2
## 110 6239.H06I04.2 6239.Y37D8A.14.2
## 111 6239.H28O16.1a 6239.Y37D8A.14.2
## 112 6239.MTCE.21 6239.Y37D8A.14.2
## 113 6239.MTCE.31 6239.Y37D8A.14.2
## 114 6239.R05G6.7.2 6239.Y37D8A.14.2
## 115 6239.T20G5.2.2 6239.Y37D8A.14.2
## 116 6239.C16A3.10a.1 6239.Y38F1A.6.6
## 117 6239.F13D12.4a.2 6239.Y38F1A.6.6
## 118 6239.T08G2.3.1 6239.Y38F1A.6.6
## 119 6239.C06G3.11a 6239.Y66D12A.22.2
## 120 6239.C18E9.6 6239.Y66D12A.22.2
## 121 6239.C34C12.8.1 6239.Y66D12A.22.2
## 122 6239.C47G2.3.1 6239.Y66D12A.22.2
## 123 6239.DY3.1 6239.Y66D12A.22.2
## 124 6239.E04A4.5.2 6239.Y66D12A.22.2
## 125 6239.T08B2.8.2 6239.Y66D12A.22.2
## 126 6239.C18E9.6 6239.ZK1248.14
## 127 6239.E04A4.7.3 6239.ZK1248.14
## 128 6239.K08F11.5.2 6239.ZK1248.14
## 129 6239.R05G6.7.2 6239.ZK1248.14
## 130 6239.C03G5.1.2 6239.ZK836.2a
## 131 6239.C05G5.4.1 6239.ZK836.2a
## 132 6239.C34E10.6.2 6239.ZK836.2a
## 133 6239.F42A8.2.1 6239.ZK836.2a
## 134 6239.F43G9.1.2 6239.ZK836.2a
## 135 6239.H28O16.1a 6239.ZK836.2a
## 136 6239.MTCE.31 6239.ZK836.2a
## 137 6239.T20G5.2.2 6239.ZK836.2a
## 138 6239.F02A9.4a 6239.ZK652.9
## 139 6239.F57B9.4b.1 6239.ZK652.9
## 140 6239.R07B7.5 6239.ZK652.9
## 141 6239.C16A3.10a.1 6239.ZK1128.1.2
##
## [[2]]
## from to
## 1 7227.FBpp0070871 7227.FBpp0070873
## 2 7227.FBpp0070087 7227.FBpp0071759
## 3 7227.FBpp0070087 7227.FBpp0071794
## 4 7227.FBpp0070871 7227.FBpp0071794
## 5 7227.FBpp0071794 7227.FBpp0072072
## 6 7227.FBpp0070168 7227.FBpp0072334
## 7 7227.FBpp0070871 7227.FBpp0072334
## 8 7227.FBpp0070871 7227.FBpp0073010
## 9 7227.FBpp0071794 7227.FBpp0073010
## 10 7227.FBpp0070871 7227.FBpp0073290
## 11 7227.FBpp0071593 7227.FBpp0073606
## 12 7227.FBpp0073606 7227.FBpp0073762
## 13 7227.FBpp0070087 7227.FBpp0074729
## 14 7227.FBpp0071759 7227.FBpp0074729
## 15 7227.FBpp0071593 7227.FBpp0075820
## 16 7227.FBpp0073606 7227.FBpp0075820
## 17 7227.FBpp0070087 7227.FBpp0076520
## 18 7227.FBpp0071759 7227.FBpp0076520
## 19 7227.FBpp0073010 7227.FBpp0076520
## 20 7227.FBpp0070871 7227.FBpp0077414
## 21 7227.FBpp0073010 7227.FBpp0077414
## 22 7227.FBpp0076520 7227.FBpp0077414
## 23 7227.FBpp0071593 7227.FBpp0078430
## 24 7227.FBpp0073606 7227.FBpp0078430
## 25 7227.FBpp0075820 7227.FBpp0078430
## 26 7227.FBpp0071794 7227.FBpp0079041
## 27 7227.FBpp0072072 7227.FBpp0079041
## 28 7227.FBpp0072334 7227.FBpp0079041
## 29 7227.FBpp0073290 7227.FBpp0079041
## 30 7227.FBpp0070871 7227.FBpp0079772
## 31 7227.FBpp0070873 7227.FBpp0079772
## 32 7227.FBpp0071794 7227.FBpp0079772
## 33 7227.FBpp0073010 7227.FBpp0079772
## 34 7227.FBpp0073290 7227.FBpp0079772
## 35 7227.FBpp0073568 7227.FBpp0081347
## 36 7227.FBpp0070871 7227.FBpp0081947
## 37 7227.FBpp0071794 7227.FBpp0081947
## 38 7227.FBpp0072072 7227.FBpp0081947
## 39 7227.FBpp0073010 7227.FBpp0081947
## 40 7227.FBpp0076607 7227.FBpp0081947
## 41 7227.FBpp0079772 7227.FBpp0081947
## 42 7227.FBpp0070168 7227.FBpp0082412
## 43 7227.FBpp0071794 7227.FBpp0082412
## 44 7227.FBpp0073606 7227.FBpp0082412
## 45 7227.FBpp0079041 7227.FBpp0082412
## 46 7227.FBpp0071593 7227.FBpp0082657
## 47 7227.FBpp0073606 7227.FBpp0082657
## 48 7227.FBpp0075820 7227.FBpp0082657
## 49 7227.FBpp0078430 7227.FBpp0082657
## 50 7227.FBpp0071593 7227.FBpp0083078
## 51 7227.FBpp0073606 7227.FBpp0083078
## 52 7227.FBpp0075820 7227.FBpp0083078
## 53 7227.FBpp0078430 7227.FBpp0083078
## 54 7227.FBpp0079772 7227.FBpp0083078
## 55 7227.FBpp0081347 7227.FBpp0083078
## 56 7227.FBpp0082657 7227.FBpp0083078
## 57 7227.FBpp0070871 7227.FBpp0085117
## 58 7227.FBpp0071794 7227.FBpp0085117
## 59 7227.FBpp0073010 7227.FBpp0085117
## 60 7227.FBpp0070873 7227.FBpp0085338
## 61 7227.FBpp0071593 7227.FBpp0085338
## 62 7227.FBpp0073606 7227.FBpp0085338
## 63 7227.FBpp0075820 7227.FBpp0085338
## 64 7227.FBpp0078430 7227.FBpp0085338
## 65 7227.FBpp0079772 7227.FBpp0085338
## 66 7227.FBpp0082657 7227.FBpp0085338
## 67 7227.FBpp0083078 7227.FBpp0085338
## 68 7227.FBpp0073568 7227.FBpp0085460
## 69 7227.FBpp0076520 7227.FBpp0085460
## 70 7227.FBpp0070087 7227.FBpp0085489
## 71 7227.FBpp0070871 7227.FBpp0085489
## 72 7227.FBpp0071794 7227.FBpp0085489
## 73 7227.FBpp0073010 7227.FBpp0085489
## 74 7227.FBpp0076607 7227.FBpp0085489
## 75 7227.FBpp0079772 7227.FBpp0085489
## 76 7227.FBpp0081947 7227.FBpp0085489
## 77 7227.FBpp0085117 7227.FBpp0085489
## 78 7227.FBpp0070087 7227.FBpp0085736
## 79 7227.FBpp0070871 7227.FBpp0085736
## 80 7227.FBpp0071794 7227.FBpp0085736
## 81 7227.FBpp0073010 7227.FBpp0085736
## 82 7227.FBpp0079772 7227.FBpp0085736
## 83 7227.FBpp0085117 7227.FBpp0085736
## 84 7227.FBpp0085489 7227.FBpp0085736
## 85 7227.FBpp0070087 7227.FBpp0085821
## 86 7227.FBpp0070871 7227.FBpp0085821
## 87 7227.FBpp0072072 7227.FBpp0085821
## 88 7227.FBpp0074729 7227.FBpp0085821
## 89 7227.FBpp0085460 7227.FBpp0085821
## 90 7227.FBpp0070871 7227.FBpp0086226
## 91 7227.FBpp0071794 7227.FBpp0086226
## 92 7227.FBpp0072072 7227.FBpp0086226
## 93 7227.FBpp0073010 7227.FBpp0086226
## 94 7227.FBpp0073290 7227.FBpp0086226
## 95 7227.FBpp0079772 7227.FBpp0086226
## 96 7227.FBpp0081947 7227.FBpp0086226
## 97 7227.FBpp0085489 7227.FBpp0086226
## 98 7227.FBpp0085736 7227.FBpp0086226
## 99 7227.FBpp0071593 7227.FBpp0086555
## 100 7227.FBpp0073606 7227.FBpp0086555
## 101 7227.FBpp0075820 7227.FBpp0086555
## 102 7227.FBpp0078430 7227.FBpp0086555
## 103 7227.FBpp0079772 7227.FBpp0086555
## 104 7227.FBpp0083078 7227.FBpp0086555
## 105 7227.FBpp0085338 7227.FBpp0086555
## 106 7227.FBpp0070087 7227.FBpp0086748
## 107 7227.FBpp0071759 7227.FBpp0086748
## 108 7227.FBpp0085489 7227.FBpp0086748
## 109 7227.FBpp0086226 7227.FBpp0086748
## 110 7227.FBpp0071593 7227.FBpp0086795
## 111 7227.FBpp0073290 7227.FBpp0086795
## 112 7227.FBpp0078430 7227.FBpp0086795
## 113 7227.FBpp0079041 7227.FBpp0086795
## 114 7227.FBpp0082657 7227.FBpp0086795
## 115 7227.FBpp0083078 7227.FBpp0086795
## 116 7227.FBpp0085338 7227.FBpp0086795
## 117 7227.FBpp0085821 7227.FBpp0086795
## 118 7227.FBpp0086226 7227.FBpp0086795
## 119 7227.FBpp0073010 7227.FBpp0088005
## 120 7227.FBpp0073568 7227.FBpp0088005
## 121 7227.FBpp0070871 7227.FBpp0100177
## 122 7227.FBpp0071794 7227.FBpp0100177
## 123 7227.FBpp0076520 7227.FBpp0100177
## 124 7227.FBpp0076607 7227.FBpp0100177
## 125 7227.FBpp0079772 7227.FBpp0100177
## 126 7227.FBpp0081947 7227.FBpp0100177
## 127 7227.FBpp0085117 7227.FBpp0100177
## 128 7227.FBpp0085489 7227.FBpp0100177
## 129 7227.FBpp0085736 7227.FBpp0100177
## 130 7227.FBpp0076520 7227.FBpp0111805
## 131 7227.FBpp0073290 7227.FBpp0271918
## 132 7227.FBpp0086795 7227.FBpp0271918
## 133 7227.FBpp0070168 7227.FBpp0291478
## 134 7227.FBpp0071593 7227.FBpp0291478
## 135 7227.FBpp0079772 7227.FBpp0291478
## 136 7227.FBpp0082412 7227.FBpp0291478
## 137 7227.FBpp0070871 7227.FBpp0300338
## 138 7227.FBpp0071794 7227.FBpp0300338
## 139 7227.FBpp0073010 7227.FBpp0300338
## 140 7227.FBpp0076520 7227.FBpp0300338
## 141 7227.FBpp0079772 7227.FBpp0300338
## 142 7227.FBpp0085117 7227.FBpp0300338
## 143 7227.FBpp0085489 7227.FBpp0300338
## 144 7227.FBpp0085736 7227.FBpp0300338
## 145 7227.FBpp0271918 7227.FBpp0300338
## 146 7227.FBpp0070873 7227.FBpp0302814
## 147 7227.FBpp0075820 7227.FBpp0302814
## 148 7227.FBpp0071593 7227.FBpp0303832
## 149 7227.FBpp0073606 7227.FBpp0303832
## 150 7227.FBpp0073762 7227.FBpp0303832
## 151 7227.FBpp0081947 7227.FBpp0303832
## 152 7227.FBpp0082412 7227.FBpp0303832
## 153 7227.FBpp0070871 7227.FBpp0305828
## 154 7227.FBpp0071794 7227.FBpp0305828
## 155 7227.FBpp0072072 7227.FBpp0305828
## 156 7227.FBpp0073010 7227.FBpp0305828
## 157 7227.FBpp0073290 7227.FBpp0305828
## 158 7227.FBpp0079041 7227.FBpp0305828
## 159 7227.FBpp0079772 7227.FBpp0305828
## 160 7227.FBpp0081947 7227.FBpp0305828
## 161 7227.FBpp0085117 7227.FBpp0305828
## 162 7227.FBpp0085489 7227.FBpp0305828
## 163 7227.FBpp0085736 7227.FBpp0305828
## 164 7227.FBpp0086226 7227.FBpp0305828
## 165 7227.FBpp0100177 7227.FBpp0305828
## 166 7227.FBpp0300338 7227.FBpp0305828
## 167 7227.FBpp0073568 7227.FBpp0298344
## 168 7227.FBpp0081347 7227.FBpp0298344## from to
## 1 6239.C03G5.1.2 6239.C05G5.4.1
## 2 6239.B0250.5 6239.C16A3.10a.1
## 3 6239.C06G3.11a 6239.C18E9.6
## 4 6239.C18E9.6 6239.C29E4.8.1
## 5 6239.C29E4.8.1 6239.C34B2.6.1
## 6 6239.B0250.5 6239.C34C12.8.1
## 7 6239.C18E9.6 6239.C34C12.8.1
## 8 6239.C29E4.8.1 6239.C34C12.8.1
## 9 6239.C34B2.6.1 6239.C34C12.8.1
## 10 6239.C03G5.1.2 6239.C34E10.6.2
## 11 6239.C05G5.4.1 6239.C34E10.6.2
## 12 6239.C29E4.8.1 6239.C34E10.6.2
## 13 6239.C06G3.11a 6239.C47G2.3.1
## 14 6239.C18E9.6 6239.C47G2.3.1
## 15 6239.C34C12.8.1 6239.C47G2.3.1
## 16 6239.C06G3.11a 6239.DY3.1
## 17 6239.C18E9.6 6239.DY3.1
## 18 6239.C47G2.3.1 6239.DY3.1
## 19 6239.C06G3.11a 6239.E04A4.5.2
## 20 6239.C18E9.6 6239.E04A4.5.2
## 21 6239.C34C12.8.1 6239.E04A4.5.2
## 22 6239.C47G2.3.1 6239.E04A4.5.2
## 23 6239.DY3.1 6239.E04A4.5.2
## 24 6239.C34E10.6.2 6239.E04A4.7.3
## 25 6239.C16A3.10a.1 6239.F10D11.1.2
## 26 6239.C34B2.6.1 6239.F10D11.1.2
## 27 6239.C34C12.8.1 6239.F10D11.1.2
## 28 6239.B0250.5 6239.F13D12.4a.2
## 29 6239.C03G5.1.2 6239.F13D12.4a.2
## 30 6239.C34E10.6.2 6239.F13D12.4a.2
## 31 6239.C29E4.8.1 6239.F29C12.4.2
## 32 6239.C34C12.8.1 6239.F29C12.4.2
## 33 6239.C34E10.6.2 6239.F29C12.4.2
## 34 6239.C03G5.1.2 6239.F42A8.2.1
## 35 6239.C05G5.4.1 6239.F42A8.2.1
## 36 6239.C34E10.6.2 6239.F42A8.2.1
## 37 6239.E04A4.7.3 6239.F42A8.2.1
## 38 6239.F10D11.1.2 6239.F42A8.2.1
## 39 6239.F13D12.4a.2 6239.F42A8.2.1
## 40 6239.C03G5.1.2 6239.F43G9.1.2
## 41 6239.C05G5.4.1 6239.F43G9.1.2
## 42 6239.C16A3.10a.1 6239.F43G9.1.2
## 43 6239.C34B2.6.1 6239.F43G9.1.2
## 44 6239.C34E10.6.2 6239.F43G9.1.2
## 45 6239.F42A8.2.1 6239.F43G9.1.2
## 46 6239.C47G2.3.1 6239.F57B9.4b.1
## 47 6239.C03G5.1.2 6239.H28O16.1a
## 48 6239.C05G5.4.1 6239.H28O16.1a
## 49 6239.C29E4.8.1 6239.H28O16.1a
## 50 6239.C34E10.6.2 6239.H28O16.1a
## 51 6239.F10D11.1.2 6239.H28O16.1a
## 52 6239.F29C12.4.2 6239.H28O16.1a
## 53 6239.F42A8.2.1 6239.H28O16.1a
## 54 6239.F43G9.1.2 6239.H28O16.1a
## 55 6239.C34E10.6.2 6239.M01F1.3.3
## 56 6239.C03G5.1.2 6239.MTCE.21
## 57 6239.C34E10.6.2 6239.MTCE.21
## 58 6239.E04A4.7.3 6239.MTCE.21
## 59 6239.F42A8.2.1 6239.MTCE.21
## 60 6239.F57B9.4b.1 6239.MTCE.21
## 61 6239.H06I04.2 6239.MTCE.21
## 62 6239.H28O16.1a 6239.MTCE.21
## 63 6239.C03G5.1.2 6239.MTCE.31
## 64 6239.C34E10.6.2 6239.MTCE.31
## 65 6239.E04A4.7.3 6239.MTCE.31
## 66 6239.F42A8.2.1 6239.MTCE.31
## 67 6239.H06I04.2 6239.MTCE.31
## 68 6239.H28O16.1a 6239.MTCE.31
## 69 6239.MTCE.21 6239.MTCE.31
## 70 6239.C03G5.1.2 6239.R05G6.7.2
## 71 6239.C18E9.6 6239.R05G6.7.2
## 72 6239.C34E10.6.2 6239.R05G6.7.2
## 73 6239.C47G2.3.1 6239.R05G6.7.2
## 74 6239.E04A4.7.3 6239.R05G6.7.2
## 75 6239.F42A8.2.1 6239.R05G6.7.2
## 76 6239.H28O16.1a 6239.R05G6.7.2
## 77 6239.MTCE.31 6239.R05G6.7.2
## 78 6239.C05G5.4.1 6239.R07B7.5
## 79 6239.C06G3.11a 6239.T08B2.8.2
## 80 6239.DY3.1 6239.T08B2.8.2
## 81 6239.C05G5.4.1 6239.T08G2.3.1
## 82 6239.F02A9.4a 6239.T08G2.3.1
## 83 6239.F43G9.1.2 6239.T08G2.3.1
## 84 6239.C03G5.1.2 6239.T20G5.2.2
## 85 6239.C05G5.4.1 6239.T20G5.2.2
## 86 6239.C34B2.6.1 6239.T20G5.2.2
## 87 6239.C34E10.6.2 6239.T20G5.2.2
## 88 6239.F10D11.1.2 6239.T20G5.2.2
## 89 6239.F42A8.2.1 6239.T20G5.2.2
## 90 6239.F43G9.1.2 6239.T20G5.2.2
## 91 6239.F49E8.5.1 6239.T20G5.2.2
## 92 6239.H28O16.1a 6239.T20G5.2.2
## 93 6239.MTCE.21 6239.T20G5.2.2
## 94 6239.R05G6.7.2 6239.T20G5.2.2
## 95 6239.T20G5.2.2 6239.W02B12.9.2
## 96 6239.C03G5.1.2 6239.Y22D7AL.5a.2
## 97 6239.C18E9.6 6239.Y22D7AL.5a.2
## 98 6239.C34B2.6.1 6239.Y22D7AL.5a.2
## 99 6239.C34C12.8.1 6239.Y22D7AL.5a.2
## 100 6239.C34E10.6.2 6239.Y22D7AL.5a.2
## 101 6239.F10D11.1.2 6239.Y22D7AL.5a.2
## 102 6239.F29C12.4.2 6239.Y22D7AL.5a.2
## 103 6239.F42A8.2.1 6239.Y22D7AL.5a.2
## 104 6239.R05G6.7.2 6239.Y22D7AL.5a.2
## 105 6239.T20G5.2.2 6239.Y22D7AL.5a.2
## 106 6239.C34E10.6.2 6239.Y37D8A.14.2
## 107 6239.E04A4.7.3 6239.Y37D8A.14.2
## 108 6239.F10D11.1.2 6239.Y37D8A.14.2
## 109 6239.F42A8.2.1 6239.Y37D8A.14.2
## 110 6239.H06I04.2 6239.Y37D8A.14.2
## 111 6239.H28O16.1a 6239.Y37D8A.14.2
## 112 6239.MTCE.21 6239.Y37D8A.14.2
## 113 6239.MTCE.31 6239.Y37D8A.14.2
## 114 6239.R05G6.7.2 6239.Y37D8A.14.2
## 115 6239.T20G5.2.2 6239.Y37D8A.14.2
## 116 6239.C16A3.10a.1 6239.Y38F1A.6.6
## 117 6239.F13D12.4a.2 6239.Y38F1A.6.6
## 118 6239.T08G2.3.1 6239.Y38F1A.6.6
## 119 6239.C06G3.11a 6239.Y66D12A.22.2
## 120 6239.C18E9.6 6239.Y66D12A.22.2
## 121 6239.C34C12.8.1 6239.Y66D12A.22.2
## 122 6239.C47G2.3.1 6239.Y66D12A.22.2
## 123 6239.DY3.1 6239.Y66D12A.22.2
## 124 6239.E04A4.5.2 6239.Y66D12A.22.2
## 125 6239.T08B2.8.2 6239.Y66D12A.22.2
## 126 6239.C18E9.6 6239.ZK1248.14
## 127 6239.E04A4.7.3 6239.ZK1248.14
## 128 6239.K08F11.5.2 6239.ZK1248.14
## 129 6239.R05G6.7.2 6239.ZK1248.14
## 130 6239.C03G5.1.2 6239.ZK836.2a
## 131 6239.C05G5.4.1 6239.ZK836.2a
## 132 6239.C34E10.6.2 6239.ZK836.2a
## 133 6239.F42A8.2.1 6239.ZK836.2a
## 134 6239.F43G9.1.2 6239.ZK836.2a
## 135 6239.H28O16.1a 6239.ZK836.2a
## 136 6239.MTCE.31 6239.ZK836.2a
## 137 6239.T20G5.2.2 6239.ZK836.2a
## 138 6239.F02A9.4a 6239.ZK652.9
## 139 6239.F57B9.4b.1 6239.ZK652.9
## 140 6239.R07B7.5 6239.ZK652.9
## 141 6239.C16A3.10a.1 6239.ZK1128.1.2## [[1]]
## UNIPROT_AC STRING_id
## 1 Q9XTI0 6239.B0250.5
## 2 Q22347 6239.T08G2.3.1
## 3 Q9XXK1 6239.H28O16.1a
## 4 P46561 6239.C34E10.6.2
## 5 P50140 6239.Y22D7AL.5a.2
## 6 P34575 6239.T20G5.2.2
## 7 Q8I7J4 6239.F57B9.4b.1
## 8 P34666 6239.ZK652.9
## 9 P24894 6239.MTCE.31
## 10 P55954 6239.Y37D8A.14.2
## 11 P24890 6239.MTCE.21
## 12 P19974 6239.E04A4.7.3
## 13 Q09508 6239.C03G5.1.2
## 14 Q09545 6239.F42A8.2.1
## 15 Q23629 6239.ZK836.2a
## 16 Q27257 6239.F49E8.5.1
## 17 Q9XV52 6239.F29C12.4.2
## 18 Q9N3T2 6239.Y47G6A.8
## 19 Q23424 6239.ZK1248.14
## 20 Q18421 6239.C34C12.8.1
## 21 Q9U2M4 6239.Y38F1A.6.6
## 22 Q93714 6239.F43G9.1.2
## 23 P34346 6239.C29E4.8.1
## 24 Q21795 6239.R07B7.5
## 25 Q21452 6239.M01F1.3.3
## 26 O44952 6239.C34B2.6.1
## 27 P34385 6239.F02A9.4a
## 28 Q23125 6239.W02B12.9.2
## 29 Q95PZ2 6239.Y67H2A.4a
## 30 Q94263 6239.K08F11.5.2
## 31 P52713 6239.F13D12.4a.2
## 32 Q17440 6239.B0035.16.1
## 33 Q09644 6239.ZK1128.1.2
## 34 Q18040 6239.C16A3.10a.1
## 35 Q02332 6239.ZK370.5.1
## 36 Q09422 6239.R07G3.5.2
## 37 Q9GYS9 6239.T08B2.8.2
## 38 Q9N361 6239.Y55F3AM.1.1
## 39 P31161 6239.F10D11.1.2
## 40 P53596 6239.C05G5.4.1
## 41 Q9N5N8 6239.H06I04.2
## 42 Q17828 6239.C08F8.2a
## 43 Q9Y0V6 6239.Y66D12A.22.2
## 44 O45319 6239.DY3.1
## 45 O44477 6239.E04A4.5.2
## 46 Q9NAQ9 6239.C47G2.3.1
## 47 Q17754 6239.C06G3.11a
## 48 Q18090 6239.C18E9.6
## 49 Q21752 6239.R05G6.7.2
##
## [[2]]
## UNIPROT_AC STRING_id
## 1 Q9V8M5 7227.FBpp0085821
## 2 Q9VSA3 7227.FBpp0076520
## 3 P35381 7227.FBpp0071794
## 4 Q05825 7227.FBpp0305828
## 5 O02649 7227.FBpp0073290
## 6 Q9W401 7227.FBpp0070871
## 7 Q9VHS7 7227.FBpp0081347
## 8 Q9VYF8 7227.FBpp0073568
## 9 P00408 7227.FBpp0100177
## 10 Q94514 7227.FBpp0081947
## 11 Q9VVG6 7227.FBpp0298344
## 12 Q9V6U9 7227.FBpp0086748
## 13 Q7KSC4 7227.FBpp0083137
## 14 Q9VFJ2 7227.FBpp0082412
## 15 Q9V784 7227.FBpp0086555
## 16 Q9W107 7227.FBpp0072334
## 17 Q9VTM5 7227.FBpp0291478
## 18 Q9VF08 7227.FBpp0082657
## 19 Q94523 7227.FBpp0085736
## 20 P21914 7227.FBpp0085489
## 21 Q9VA02 7227.FBpp0085117
## 22 Q9VQG4 7227.FBpp0077414
## 23 Q9VM33 7227.FBpp0079041
## 24 Q7K7A9 7227.FBpp0086223
## 25 Q7YU24 7227.FBpp0070873
## 26 P48604 7227.FBpp0086795
## 27 Q9W265 7227.FBpp0071759
## 28 Q9VWH4 7227.FBpp0300338
## 29 Q9U915 7227.FBpp0072072
## 30 A1Z746 7227.FBpp0088005
## 31 Q7JQW6 7227.FBpp0288705
## 32 Q7KUT2 7227.FBpp0271918
## 33 Q9V9A7 7227.FBpp0085460
## 34 Q9VAY3 7227.FBpp0084635
## 35 A2VEI2 7227.FBpp0111941
## 36 Q8IMX7 7227.FBpp0302814
## 37 Q7KW39 7227.FBpp0070087
## 38 Q9W5B6 7227.FBpp0070168
## 39 Q9VGR2 7227.FBpp0081828
## 40 Q9VW26 7227.FBpp0074729
## 41 P91622 7227.FBpp0111805
## 42 O46084 7227.FBpp0070350
## 43 Q9W021 7227.FBpp0303832
## 44 Q9VY28 7227.FBpp0073762
## 45 Q00637 7227.FBpp0086226
## 46 Q94522 7227.FBpp0073010
## 47 Q9U4F3 7227.FBpp0076607
## 48 Q9VN03 7227.FBpp0271517
## 49 Q9W2D6 7227.FBpp0071593
## 50 Q9VTN3 7227.FBpp0075820
## 51 Q9VNA0 7227.FBpp0078430
## 52 Q8IN78 7227.FBpp0083078
## 53 Q9VYD7 7227.FBpp0073606
## 54 A1Z6L1 7227.FBpp0085338
## 55 Q94920 7227.FBpp0079772## UNIPROT_AC STRING_id
## 1 Q9V8M5 7227.FBpp0085821
## 2 Q9VSA3 7227.FBpp0076520
## 3 P35381 7227.FBpp0071794
## 4 Q05825 7227.FBpp0305828
## 5 O02649 7227.FBpp0073290
## 6 Q9W401 7227.FBpp0070871
## 7 Q9VHS7 7227.FBpp0081347
## 8 Q9VYF8 7227.FBpp0073568
## 9 P00408 7227.FBpp0100177
## 10 Q94514 7227.FBpp0081947
## 11 Q9VVG6 7227.FBpp0298344
## 12 Q9V6U9 7227.FBpp0086748
## 13 Q7KSC4 7227.FBpp0083137
## 14 Q9VFJ2 7227.FBpp0082412
## 15 Q9V784 7227.FBpp0086555
## 16 Q9W107 7227.FBpp0072334
## 17 Q9VTM5 7227.FBpp0291478
## 18 Q9VF08 7227.FBpp0082657
## 19 Q94523 7227.FBpp0085736
## 20 P21914 7227.FBpp0085489
## 21 Q9VA02 7227.FBpp0085117
## 22 Q9VQG4 7227.FBpp0077414
## 23 Q9VM33 7227.FBpp0079041
## 24 Q7K7A9 7227.FBpp0086223
## 25 Q7YU24 7227.FBpp0070873
## 26 P48604 7227.FBpp0086795
## 27 Q9W265 7227.FBpp0071759
## 28 Q9VWH4 7227.FBpp0300338
## 29 Q9U915 7227.FBpp0072072
## 30 A1Z746 7227.FBpp0088005
## 31 Q7JQW6 7227.FBpp0288705
## 32 Q7KUT2 7227.FBpp0271918
## 33 Q9V9A7 7227.FBpp0085460
## 34 Q9VAY3 7227.FBpp0084635
## 35 A2VEI2 7227.FBpp0111941
## 36 Q8IMX7 7227.FBpp0302814
## 37 Q7KW39 7227.FBpp0070087
## 38 Q9W5B6 7227.FBpp0070168
## 39 Q9VGR2 7227.FBpp0081828
## 40 Q9VW26 7227.FBpp0074729
## 41 P91622 7227.FBpp0111805
## 42 O46084 7227.FBpp0070350
## 43 Q9W021 7227.FBpp0303832
## 44 Q9VY28 7227.FBpp0073762
## 45 Q00637 7227.FBpp0086226
## 46 Q94522 7227.FBpp0073010
## 47 Q9U4F3 7227.FBpp0076607
## 48 Q9VN03 7227.FBpp0271517
## 49 Q9W2D6 7227.FBpp0071593
## 50 Q9VTN3 7227.FBpp0075820
## 51 Q9VNA0 7227.FBpp0078430
## 52 Q8IN78 7227.FBpp0083078
## 53 Q9VYD7 7227.FBpp0073606
## 54 A1Z6L1 7227.FBpp0085338
## 55 Q94920 7227.FBpp0079772