plot_ecdf_test_stat {GeneAccord} | R Documentation |
This function plots the ECDFs of the test statistic under the null hypothesis.
plot_ecdf_test_stat(ecdf_list, plot_idx = c(2, 3), num_panel_rows = 1, output_pdf = "direct")
ecdf_list |
The list of ECDF's as generated with
|
plot_idx |
The index of which of the list entries of the ecdf_list to plot. Default: c(2,3). |
num_panel_rows |
The ECDF's will be plotted altogether, hence
|
output_pdf |
The name of the pdf to be generated. Or if output_pdf is "direct", then the plot is generated directly and not to a pdf. Default: "direct". |
The ECDF's of the test statistic under the null for a data set can be
generated with generate_ecdf_test_stat
.
Afterwards, they can be visualized with this function. It is assumed
that the first ECDF in the ecdf_list is
the ECDF for the case where pairs are mutated in two patients.
None, the function plots ecdf curves.
Ariane L. Moore
avg_rates_m <- c(pat1=0.1, pat2=0.034, pat3=0.21, pat4=0.063) list_of_num_trees_all_pats <- list(pat1=c(20, 20, 19), pat2=c(20, 18, 20), pat3=c(19, 20, 20), pat4=c(20, 20, 20)) list_of_clon_excl_all_pats <- list(pat1=c(5, 0, 1), pat2=c(10, 2, 0), pat3=c(18, 12, 0), pat4=c(0, 2, 0)) num_pat_pair_max <- 2 num_pairs_sim <- 10 ecdf_list <- generate_ecdf_test_stat(avg_rates_m, list_of_num_trees_all_pats, list_of_clon_excl_all_pats, num_pat_pair_max, num_pairs_sim) plot_ecdf_test_stat(ecdf_list, plot_idx=2)