extract_num_clones_tbl {GeneAccord} | R Documentation |
Extract number of clones in each patient.
extract_num_clones_tbl(clone_tbl)
clone_tbl |
The tibble generated with
|
Given a clone tibble as created with
create_tbl_ent_clones
this function
extracts the information, how many clones there are
in each patient. The counted clones will be those
with at least one non-zero entry, i.e.
at least one gene/pathway assigned to the clone.
A named vector with the number of clones in each patient. The name of each element is the respective patient_id.
Ariane L. Moore
clone_tbl <- dplyr::tibble( file_name=c(rep("fn1", 2), rep("fn2", 2)), patient_id=c(rep("pat1", 2), rep("pat2", 2)), altered_entity=c("pw1", "pw2", "pw1", "pw3"), clone1=c(0, 0, 0, 0), clone2=c(0, 1, 0, 1), clone3=c(1, 1, 0, 1), clone4=c(1, 0, 0, 0)) extract_num_clones_tbl(clone_tbl)