AlvMac_results {GOexpress}R Documentation

Sample output from the GO_analyse() function on an RNAseq experiment.

Description

This variable may be used to test the filtering and visualisation methods implemented in the package. It contains the output of the command AlvMac_results = GO_analyse(eSet=AlvMac, f="Treatment") applied to the toy input data AlvMac.

Usage

data(AlvMac_results)

Value

A list of 9 slots summarising the input and results of the analysis:

Warning

Running the above command again, you might obtain slightly different scores and ranks due to the stochastic process of sampling used by the random forest algorithm. However, the ranking metric was found to be robust and stable across run, given adequate number of trees and predictor variables sampled.

To produce reproducible results, use the set.seed() function prior to running any randomising or sampling function.

Source

Source data are part of a publication in review.

Examples

data(AlvMac_results)
str(AlvMac_results)
head(AlvMac_results$GO, n=20)
head(AlvMac_results$GO$genes, n=20)

[Package GOexpress version 1.16.1 Index]