computeBackgroundColor {FlowSOM}R Documentation

Internal function for computing background nodes

Description

Internal function for computing background nodes

Usage

computeBackgroundColor(backgroundValues, backgroundColor,
  backgroundLim = NULL, backgroundBreaks = NULL)

Arguments

backgroundValues

Values to be used for background coloring, either numerical values or something that can be made into a factor (e.g. a clustering)

backgroundColor

Colorpalette to be used for the background coloring . Can be either a function or an array specifying colors

backgroundLim

Only used when backgroundValues are numerical. Defaults to min and max of the backgroundValues.

backgroundBreaks

Breaks to pass on to cut, to split numerical background values. If NULL, the length of backgroundColor will be used (default 100).


[Package FlowSOM version 1.14.1 Index]