.loadPgExample {FindMyFriends} | R Documentation |
This function loads an example pangenome at various stages of calculation, useful for examples and tests.
.loadPgExample(lowMem = FALSE, geneLoc = FALSE, withGroups = FALSE, withNeighborhoodSplit = FALSE, withParalogues = FALSE)
lowMem |
logical. Should the returned object inherit from pgLM |
geneLoc |
logical. Should the returned object inherit from pgVirtualLoc |
withGroups |
logical. Should gene groups be defined |
withNeighborhoodSplit |
logical. Should neighborhoodsplitting have been performed |
withParalogues |
logical. Should paralogue linking have been performed |
A pgVirtual subclass object to the specifications defined
# Load standard (pgFull) .loadPgExample() # Use pgLM .loadPgExample(lowMem=TRUE) # Create with pgVirtualLoc subclass (here pgFullLoc) .loadPgExample(geneLoc=TRUE) # Create with grouping information .loadPgExample(withGroups=TRUE) # Create with gene groups split by neighborhood (pgVirtualLoc implied) .loadPgExample(withNeighborhoodSplit=TRUE) # Create with paralogue links .loadPgExample(withGroups=TRUE, withParalogues=TRUE)