deepblue_count_gene_ontology_terms {DeepBlueR} | R Documentation |
Summarize the controlled_vocabulary fields, from experiments that match the selection criteria. It is similar to the 'collection_experiments_count' command, but this command return the summarization for all controlled_vocabulary terms.
deepblue_count_gene_ontology_terms(genes = NULL, go_terms = NULL, chromosome = NULL, start = NULL, end = NULL, gene_model = NULL, user_key = deepblue_options("user_key"))
genes |
- A string or a vector of string (Name(s) or ENSEMBL ID (ENSGXXXXXXXXXXX.X ) of the gene(s).) |
go_terms |
- A string or a vector of string (gene ontology terms - ID or label) |
chromosome |
- A string or a vector of string (chromosome name(s)) |
start |
- A int (minimum start region) |
end |
- A int (maximum end region) |
gene_model |
- A string (the gene model) |
user_key |
- A string (users token key) |
faceting - A struct (Map with the mandatory fields of the experiments metadata, where each contains a list of terms that appears.)
Other Gene models and genes identifiers: deepblue_list_gene_models
,
deepblue_list_genes
,
deepblue_select_genes
gene_names = c('CCR1', 'CD164', 'CD1D', 'CD2', 'CD34', 'CD3G', 'CD44') deepblue_count_gene_ontology_terms (genes = gene_names, gene_model = "gencode v23")