joinReplicates {DMRcaller} | R Documentation |
This function joins together data that come from biological replicates to perform analysis
joinReplicates(methylationData1, methylationData2, usecomplete = FALSE)
methylationData1 |
the methylation data stored as a |
methylationData2 |
the methylation data stored as a |
usecomplete |
Boolean, determine wheter, when the two dataset differ for number of cytosines, if the smaller dataset should be added with zero reads to match the bigger dataset. |
returns a GRanges
object containing multiple metadata
columns with the reads from each object passed as parameter
Alessandro Pio Greco and Nicolae Radu Zabet
## Not run: # load the methylation data data(methylationDataList) # Joins the wildtype and the mutant in a single object joined_data <- joinReplicates(methylationDataList[["WT"]], methylationDataList[["met1-3"]], FALSE) ## End(Not run)