testForDEU {DEXSeq} | R Documentation |
This will perform a likelihood ratio test for differential
exon usage. Internally, it calls the DESeq2 function
nbinomLRT
.
testForDEU( object, fullModel = design(object), reducedModel = ~ sample + exon, BPPARAM=SerialParam() )
object |
A DEXSeqDataSet object. |
fullModel |
The full model formula |
reducedModel |
Null model formula. |
BPPARAM |
A "BiocParallelParam" instance.
See |
The information of the variables of the formulas
should be present in the colData
of the
DEXSeqDataSet
object.
A DEXSeqDataSet
with slots filled with information
about the test.
data(pasillaDEXSeqDataSet, package="pasilla") dxd <- estimateSizeFactors( dxd ) dxd <- estimateDispersions( dxd ) dxd <- testForDEU( dxd )