findOverlaps {DEXSeq} | R Documentation |
This function generates an MA plot.
## S4 method for signature 'DEXSeqResults,GenomicRanges' subsetByOverlaps( x, ranges, maxgap = -1L, minoverlap = 0L, type = c("any", "start", "end", "within", "equal"), ignore.strand = FALSE ) ## S4 method for signature 'DEXSeqResults,GenomicRanges' findOverlaps( query, subject, maxgap = -1L, minoverlap = 0L, type = c("any", "start", "end", "within", "equal"), ignore.strand = FALSE )
query, x |
Either a |
subject, ranges |
A GRanges or GRangesList object. |
maxgap, minoverlap, type |
See |
ignore.strand |
See |
data(pasillaDEXSeqDataSet, package="pasilla") dxd <- estimateSizeFactors( dxd ) dxd <- estimateDispersions( dxd ) dxd <- testForDEU( dxd ) dxr <- DEXSeqResults( dxd ) interestingRegion = GRanges("chr2L", IRanges(start=3872658, end=3875302)) subsetByOverlaps( x=dxr, ranges=interestingRegion ) findOverlaps( query=dxr, subject=interestingRegion )