estimateTechnicalNoise {Chicago} | R Documentation |
Calculates the expected technical noise based on trans read pairs.
estimateTechnicalNoise(cd, plot = TRUE, outfile = NULL)
cd |
A |
plot |
Logical - if |
outfile |
|
An object of class chicagoData
, with additional columns "tlb", "tblb", "Tmean".
The object intData(cd)
is updated by reference. Thus, intData(cd)
will be altered. See vignette for further information.
Mikhail Spivakov, Jonathan Cairns, Paula Freire Pritchett
data(cdUnitTest) ##modifications to cdUnitTest, ensuring it uses correct design directory designDir <- file.path(system.file("extdata", package="Chicago"), "unitTestDesign") cdUnitTest <- modifySettings(cd=cdUnitTest, designDir=designDir) cdUnitTest <- estimateTechnicalNoise(cdUnitTest)