ExoDataBlacklist {ChIPexoQual} | R Documentation |
ExoDataBlacklist
separates the regions in an ExoData
object by overlapping them
with a set of blacklisted regions and calculates the quality parameters in both collections of
islands.
ExoDataBlacklist(exo, blacklist, which.param = "beta1", nregions = NULL, ntimes = NULL)
exo |
a |
blacklist |
a |
which.param |
a character value with either |
nregions |
a numeric value indicating the number of regions sampled to
estimate the quality parameter distributions. The default value is extracted from |
ntimes |
a numeric value indicating the number of times that regions are
sampled to estimate the quality parameter distributions. The default value
is extracted from |
A ggplot
object with a boxplot that compares the quality scores distribution when the regions
overlap a pre-defined collection of blacklists.
data(exoExample) data(blacklists) ExoDataBlacklist(exoExample,blacklists[["mm9"]],ntimes = 10,nregions = 500)