plotPolymorphicRegion {CNVrd2} | R Documentation |
Plot polymorphic regions based on coordinates set by users.
plotPolymorphicRegion(Object, ...)
Object |
An object of class CNVrd2 |
... |
Optional arguments. |
putativeBoundary |
Putative boundaries of polymorphic regions based on quantile values. |
Users can choose various quantile values and adjust different thresholds to obtain polymorphic regions.
Hoang Tan Nguyen, Tony R Merriman and MA Black. hoangtannguyenvn@gmail.com
## Not run: plotPolymorphicRegion(Object = objectCNVrd2, polymorphicRegionObject = fcgr3PolymorphicRegion, xlim = c(161300000, 161800000), drawThresholds = TRUE, thresholdForPolymorphicRegions = c(0.75, 0.25)) ##Change thresholds plotPolymorphicRegion(Object = objectCNVrd2, polymorphicRegionObject = fcgr3PolymorphicRegion, xlim = c(161300000, 161800000), drawThresholds = TRUE, thresholdForPolymorphicRegions = c(0.9, 0.1)) ##Plot standard deviation plotPolymorphicRegion(Object = objectCNVrd2, polymorphicRegionObject = fcgr3PolymorphicRegion, xlim = c(161300000, 161800000), typePlot = "SD", thresholdForPolymorphicRegions = c(0.75, 0.25)) ## End(Not run)