printEffects {CGEN} | R Documentation |
Prints an object returned from snp.logistic
or snp.matched
printEffects(obj, op=NULL)
obj |
The return object from |
op |
Options list with names "digits" and "method" (see details). The default is NULL. |
Below are the names for the options list op
. All names have default values
if they are not specified.
digits
Integer: Number of significant digits to print. The default is 2.
method
Vector of values from "UML", "CML", "EB" or "CCL", "HCL", "CLR". The default is NULL.
Returns NULL
# Use the ovarian cancer data data(Xdata, package="CGEN") # Fit using a stratification variable fit <- snp.logistic(Xdata, "case.control", "BRCA.status", main.vars=c("oral.years", "n.children"), int.vars=c("oral.years", "n.children"), strata.var="ethnic.group") # Compute the effects effects <- snp.effects(fit, "oral.years", var.levels=c(0, 2, 3)) printEffects(effects)