stat_overlap_mods {CEMiTool} | R Documentation |
Calculate module overlap statistics
stat_overlap_mods(analyses, comp_group, subject_col = NULL, ...)
analyses |
List of |
comp_group |
Character string indicating the group to be compared against |
subject_col |
Optional character string indicating a column in the |
... |
Additional parameters |
A list containing overlap statistics, node and study information and module activity
## Not run: # Run the cemitool function twice on expr dataset. Each time, one sample will be removed data(expr0) set.seed(10) dset1 <- expr0[,-sample(1:ncol(expr0), 1)] dset2 <- expr0[,-sample(1:ncol(expr0), 1)] cem1 <- cemitool(dset1, sample_annot, plot=FALSE) cem2 <- cemitool(dset2, sample_annot, plot=FALSE) mod_stats <- stat_overlap_mods(analyses=list(cem1, cem2), comp_group="g0") ## End(Not run)