get_connectivity {CEMiTool} | R Documentation |
This function takes a CEMiTool object and returns the network connectivity.
get_connectivity(cem, ...) ## S4 method for signature 'CEMiTool' get_connectivity(cem, beta)
cem |
Object of class |
... |
Optional parameters. |
beta |
A soft-thresholding value to be used for the network. |
The value of the network's connectivity.
# Get example expression data data(expr0) # Initialize new CEMiTool object with expression data cem <- new_cem(expr0, filter=TRUE, apply_vst=FALSE) # Get modules and beta data cem <- find_modules(cem) # Get network connectivity with example beta value 8 get_connectivity(cem, beta=8)