stat_overlap_mods {CEMiTool}R Documentation

Calculate module overlap statistics

Description

Calculate module overlap statistics

Usage

stat_overlap_mods(analyses, comp_group, subject_col = NULL, ...)

Arguments

analyses

List of CEMiTool objects

comp_group

Character string indicating the group to be compared against

subject_col

Optional character string indicating a column in the CEMiTool objects' sample annotation slot object containing subject information

...

Additional parameters

Value

A list containing overlap statistics, node and study information and module activity

Examples

## Not run: 
# Run the cemitool function twice on expr dataset. Each time, one sample will be removed
data(expr0)
set.seed(10)
dset1 <- expr0[,-sample(1:ncol(expr0), 1)]
dset2 <- expr0[,-sample(1:ncol(expr0), 1)]
cem1 <- cemitool(dset1, sample_annot, plot=FALSE)
cem2 <- cemitool(dset2, sample_annot, plot=FALSE)
mod_stats <- stat_overlap_mods(analyses=list(cem1, cem2), comp_group="g0")

## End(Not run)

[Package CEMiTool version 1.6.11 Index]