mod_ora {CEMiTool} | R Documentation |
Performs overrepresentation analysis for each co-expression module found.
mod_ora(cem, ...) ## S4 method for signature 'CEMiTool' mod_ora(cem, gmt, verbose = FALSE)
cem |
Object of class |
... |
Optional parameters. |
gmt |
Object of class |
verbose |
logical. Report analysis steps. |
Object of class CEMiTool
# Get example CEMiTool object data(cem) # Read gmt file gmt <- read_gmt(system.file('extdata', 'pathways.gmt', package='CEMiTool')) # Run module overrepresentation analysis cem <- mod_ora(cem, gmt) # Check results head(ora_data(cem))