import.bam.ctss {CAGEr} | R Documentation |
Imports CTSS data from a BAM file.
import.bam.ctss(filepath, filetype, sequencingQualityThreshold, mappingQualityThreshold, removeFirstG, correctSystematicG, genome)
filepath |
The path to the BAM file. |
filetype |
bam or bamPairedEnd. |
sequencingQualityThreshold |
See getCTSS(). |
mappingQualityThreshold |
See getCTSS(). |
removeFirstG |
See getCTSS(). |
correctSystematicG |
See getCTSS(). |
genome |
See coerceInBSgenome(). |
Returns a CTSS object.
Other loadFileIntoGPos: bam2CTSS
,
import.CTSS
, import.bam
,
import.bedCTSS
,
import.bedScore
,
import.bedmolecule
,
loadFileIntoGPos
,
moleculesGR2CTSS