readGmt {BioQC} | R Documentation |
Read in gene sets from a GMT file
readGmt(filename)
filename |
GMT file name |
A gene set list, wrapped in a S3-class gmtlist
. Each list item is
a list with three items: gene set name (name
), gene set
description (desc
), and gene list (a character vector,
genes
).
Jitao David Zhang <jitao_david.zhang@roche.com>
gmt_file <- system.file("extdata/exp.tissuemark.affy.roche.symbols.gmt", package="BioQC") gmt_list <- readGmt(gmt_file)