matchGenes {BioQC}R Documentation

Match genes in a list-like object to a vector of genesymbols

Description

Match genes in a list-like object to a vector of genesymbols

Usage

matchGenes(list, object, ...)

## S4 method for signature 'GmtList,character'
matchGenes(list, object)

## S4 method for signature 'GmtList,matrix'
matchGenes(list, object)

## S4 method for signature 'GmtList,eSet'
matchGenes(list, object, col = "GeneSymbol")

## S4 method for signature 'character,character'
matchGenes(list, object)

## S4 method for signature 'character,matrix'
matchGenes(list, object)

## S4 method for signature 'character,eSet'
matchGenes(list, object)

## S4 method for signature 'SignedGenesets,character'
matchGenes(list, object)

## S4 method for signature 'SignedGenesets,matrix'
matchGenes(list, object)

## S4 method for signature 'SignedGenesets,eSet'
matchGenes(list, object, col = "GeneSymbol")

Arguments

list

A GmtList, list, character or SignedGenesets object

object

Gene symbols to be matched; they can come from a vector of character strings, or a column in the fData of an eSet object.

...

additional arguments like col

col

Column name of fData in an eSet to specify where gene symbols are stored. The default value is set to "GeneSymbol"


[Package BioQC version 1.10.0 Index]