FilesMethods {BaseSpaceR} | R Documentation |
Files
objects and relatedMethods to handle various files types.
The Files resource provides access to files stored in BaseSpace. A file should be seen as a data stream and associated attributes (date created, size, type, etc.).
For known file types (.bam, .vcf, etc.) we offer wrappers to 'map' this objects to various Bioconductor objects.
Adrian Alexa
https://developer.basespace.illumina.com/docs/content/documentation/rest-api/api-reference
AppAuth
, AppResults
and
Files
data(aAuth) ## get one AppResult reseq <- AppResults(listAppResults(aAuth, projectId = 21383369, Limit = 1)) f <- listFiles(reseq) TotalCount(f) Name(f) ## list only the BAM files f <- listFiles(aAuth, appResultId = Id(reseq), Extensions = ".bam") Name(f) ## construct the BAMFile ##...