excounts {ABSSeq} | R Documentation |
Accessors for the 'excounts' slot of a ABSDataSet object, return a matrix
## S4 replacement method for signature 'ABSDataSet,matrix' excounts(object)<-value
object |
a |
value |
an numeric matrix |
The excounts slot holds the nomarlized (trimmed or not) count data as a matrix of non-negative integer count values, rows and columns for genes and samples, respectively.
ABSDataSet
, ReplaceOutliersByMAD
data(simuN5) obj <- ABSDataSet(counts=simuN5$counts, groups=factor(simuN5$groups)) obj <- normalFactors(obj) obj <- ReplaceOutliersByMAD(obj) head(excounts(obj))