cl | Bifurcating lineages data |
clusterLabels-method | Class 'SlingshotDataSet' |
getCurves | Construct Smooth Lineage Curves |
getCurves-method | Construct Smooth Lineage Curves |
getLineages | Infer Lineage Structure from Clustered Samples |
getLineages-method | Infer Lineage Structure from Clustered Samples |
lines-method | Plot Slingshot output |
newSlingshotDataSet | Initialize an object of class 'SlingshotDataSet' |
newSlingshotDataSet-method | Initialize an object of class 'SlingshotDataSet' |
pairs-SlingshotDataSet | Pairs plot of Slingshot output |
pairs.SlingshotDataSet | Pairs plot of Slingshot output |
params | Parameters for simulating a single lineage |
plot-method | Plot Slingshot output |
plot-SlingshotDataSet | Plot Slingshot output |
plot3d-SlingshotDataSet | Plot Slingshot output in 3D |
plot3d.SlingshotDataSet | Plot Slingshot output in 3D |
plotGenePseudotime | Plot Gene Expression by Pseudotime |
plotGenePseudotime-method | Plot Gene Expression by Pseudotime |
predict-method | Predict from a Slingshot model |
rd | Bifurcating lineages data |
reducedDim-method | Class 'SlingshotDataSet' |
reducedDims-method | Class 'SlingshotDataSet' |
show-method | Class 'SlingshotDataSet' |
slingAdjacency | Extract Slingshot adjacency matrix |
slingAdjacency-method | Extract Slingshot adjacency matrix |
slingCurves | Extract simultaneous principal curves |
slingCurves-method | Extract simultaneous principal curves |
slingCurveWeights | Get Slingshot pseudotime values |
slingCurveWeights-method | Get Slingshot pseudotime values |
slingLineages | Extract the Slingshot lineages |
slingLineages-method | Extract the Slingshot lineages |
slingParams | Methods for parameters used by Slingshot |
slingParams-method | Methods for parameters used by Slingshot |
slingPseudotime | Get Slingshot pseudotime values |
slingPseudotime-method | Get Slingshot pseudotime values |
slingshot | Perform lineage inference with Slingshot |
slingshot-method | Perform lineage inference with Slingshot |
SlingshotDataSet | Extract Slingshot output |
SlingshotDataSet-class | Class 'SlingshotDataSet' |
SlingshotDataSet-method | Extract Slingshot output |
slingshotExample | Bifurcating lineages data |
splatterParameters | Parameters for simulating a single lineage |
[-method | Class 'SlingshotDataSet' |