mzR-package |
parser for mzXML, mzData, mzML and mzid files (mass spectrometry data) |
analyzer |
Access the metadata from an 'mzR' object. |
analyzer-method |
Class 'mzR' and sub-classes |
chromatogram |
Access the raw data from an 'mzR' object. |
chromatogram-method |
Access the raw data from an 'mzR' object. |
chromatogramHeader |
Access the raw data from an 'mzR' object. |
chromatogramHeader-method |
Access the raw data from an 'mzR' object. |
chromatograms |
Access the raw data from an 'mzR' object. |
chromatograms-method |
Access the raw data from an 'mzR' object. |
chromatogramsInfo |
Access the metadata from an 'mzR' object. |
chromatogramsInfo-method |
Class 'mzR' and sub-classes |
class:mzR |
Class 'mzR' and sub-classes |
class:mzRident |
Class 'mzR' and sub-classes |
class:mzRnetCDF |
Class 'mzR' and sub-classes |
class:mzRpwiz |
Class 'mzR' and sub-classes |
class:mzRramp |
Class 'mzR' and sub-classes |
close |
Class 'mzR' and sub-classes |
close-method |
Class 'mzR' and sub-classes |
copyWriteMSData |
Write MS spectrum data to a MS file copying metadata from the originating file |
database |
Access the metadata from an 'mzR' object. |
database-method |
Class 'mzR' and sub-classes |
detector |
Access the metadata from an 'mzR' object. |
detector-method |
Class 'mzR' and sub-classes |
enzymes |
Access the metadata from an 'mzR' object. |
enzymes-method |
Class 'mzR' and sub-classes |
fileName |
Create and check mzR objects from netCDF, mzXML, mzData or mzML files. |
fileName-method |
Class 'mzR' and sub-classes |
get3Dmap |
Access the raw data from an 'mzR' object. |
get3Dmap-method |
Access the raw data from an 'mzR' object. |
header |
Access the raw data from an 'mzR' object. |
header-method |
Access the raw data from an 'mzR' object. |
initializeRamp |
Create and check mzR objects from netCDF, mzXML, mzData or mzML files. |
initializeRamp-method |
Class 'mzR' and sub-classes |
instrumentInfo |
Access the metadata from an 'mzR' object. |
instrumentInfo-method |
Class 'mzR' and sub-classes |
ionisation |
Access the metadata from an 'mzR' object. |
ionisation-method |
Class 'mzR' and sub-classes |
isInitialized |
Create and check mzR objects from netCDF, mzXML, mzData or mzML files. |
isInitialized-method |
Class 'mzR' and sub-classes |
isolationWindow |
Returns the ion selection isolation window |
isolationWindow-method |
Returns the ion selection isolation window |
isolationWindow-methods |
Returns the ion selection isolation window |
length |
Class 'mzR' and sub-classes |
length-method |
Class 'mzR' and sub-classes |
manufacturer |
Access the metadata from an 'mzR' object. |
manufacturer-method |
Class 'mzR' and sub-classes |
model |
Access the metadata from an 'mzR' object. |
model-method |
Class 'mzR' and sub-classes |
modifications |
Access the metadata from an 'mzR' object. |
modifications-method |
Class 'mzR' and sub-classes |
mzidInfo |
Access the metadata from an 'mzR' object. |
mzidInfo-method |
Class 'mzR' and sub-classes |
mzR |
parser for mzXML, mzData, mzML and mzid files (mass spectrometry data) |
mzR-class |
Class 'mzR' and sub-classes |
mzRident-class |
Class 'mzR' and sub-classes |
mzRnetCDF-class |
Class 'mzR' and sub-classes |
mzRpwiz-class |
Class 'mzR' and sub-classes |
mzRramp-class |
Class 'mzR' and sub-classes |
nChrom |
Access the raw data from an 'mzR' object. |
openIDfile |
Create and check mzR objects from netCDF, mzXML, mzData or mzML files. |
openMSfile |
Create and check mzR objects from netCDF, mzXML, mzData or mzML files. |
para |
Access the metadata from an 'mzR' object. |
para-method |
Class 'mzR' and sub-classes |
peaks |
Access the raw data from an 'mzR' object. |
peaks-method |
Access the raw data from an 'mzR' object. |
peaksCount |
Access the raw data from an 'mzR' object. |
peaksCount-method |
Access the raw data from an 'mzR' object. |
psms |
Access the metadata from an 'mzR' object. |
psms-method |
Class 'mzR' and sub-classes |
pwiz.version |
Get the version number of pwiz backend. |
runInfo |
Access the metadata from an 'mzR' object. |
runInfo-method |
Class 'mzR' and sub-classes |
sampleInfo |
Access the metadata from an 'mzR' object. |
sampleInfo-method |
Class 'mzR' and sub-classes |
score |
Access the metadata from an 'mzR' object. |
score-method |
Class 'mzR' and sub-classes |
softwareInfo |
Access the metadata from an 'mzR' object. |
softwareInfo-method |
Class 'mzR' and sub-classes |
sourceInfo |
Access the metadata from an 'mzR' object. |
sourceInfo-method |
Class 'mzR' and sub-classes |
specParams |
Access the metadata from an 'mzR' object. |
specParams-method |
Class 'mzR' and sub-classes |
spectra |
Access the raw data from an 'mzR' object. |
spectra-method |
Access the raw data from an 'mzR' object. |
substitutions |
Access the metadata from an 'mzR' object. |
substitutions-method |
Class 'mzR' and sub-classes |
tic |
Access the raw data from an 'mzR' object. |
tic-method |
Access the raw data from an 'mzR' object. |
tolerance |
Access the metadata from an 'mzR' object. |
tolerance-method |
Class 'mzR' and sub-classes |
writeMSData |
Write MS spectrum data to an MS file |
writeMSData-method |
Write MS spectrum data to an MS file |