RIVER-package |
RIVER: R package for an implementation of an extensible predictive model for combining whole genome sequences with molecular phenotypes to identify high-impact rare variants. |
appRIVER |
Application of RIVER |
evaRIVER |
Evaluation of RIVER |
getData |
Get coordinated data from a compressed file for RIVER |
getFuncRvFeat |
Posterior probabilities of FR given G |
getFuncRvPosteriors |
Posterior probabilities of FR given G and E. |
integratedEM |
An iterative expectation-maximization algorithm for RIVER |
mleBeta |
Maximum likelihoood estimate of beta. |
mleTheta |
Maximum likelihoood estimate of theta. |
plotPosteriors |
Draw scatter plots of posterior probabilities from both RIVER GAM in terms of outlier status. |
RIVER |
RIVER: R package for an implementation of an extensible predictive model for combining whole genome sequences with molecular phenotypes to identify high-impact rare variants. |
testPosteriors |
Test posterior probabilities of FR given G and E |