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Documentation for package ‘Glimma’ version 1.10.1

Help Pages

arraydata Example microarray for the study of Ezh2.
as.hexcol Numeric to hex colour converter
glBar Glimma MD Plot
glBar.default Glimma MD Plot
glimma Glimma plot manager
gllink Plot linkages
glMDPlot Glimma MD Plot
glMDPlot.default Glimma MD Plot
glMDPlot.DESeqDataSet Glimma MD Plot
glMDPlot.DESeqResults Glimma MD Plot
glMDPlot.DGEExact Glimma MD Plot
glMDPlot.DGELRT Glimma MD Plot
glMDPlot.MArrayLM Glimma MD Plot
glMDRmd glMDPlot Rmarkdown link and instructions
glMDSPlot Glimma MDS Plot
glMDSPlot.default Glimma MDS Plot
glMDSPlot.DESeqDataSet Glimma MDS Plot
glMDSPlot.DGEList Glimma MDS Plot
glScatter Glimma Scatter Plot
glScatter.default Glimma Scatter Plot
glTable Glimma Table
gltablink Plot linkages
glXYPlot Glimma XY Plot
is.hex Hexcode colours
lymphomaRNAseq Mouse based RNAseq data for study of smchd1 gene.
makeJson JSON converter for R objects
makeJson.data.frame JSON converter for data frames
makeJson.jschart JSON converter for chart objects