TxDb.Hsapiens.UCSC.hg19.knownGene

DOI: 10.18129/B9.bioc.TxDb.Hsapiens.UCSC.hg19.knownGene    

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see TxDb.Hsapiens.UCSC.hg19.knownGene.

Annotation package for TxDb object(s)

Bioconductor version: 3.7

Exposes an annotation databases generated from UCSC by exposing these as TxDb objects

Author: Marc Carlson, Bioconductor Package Maintainer <maintainer at bioconductor.org> [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("TxDb.Hsapiens.UCSC.hg19.knownGene")

Documentation

PDF		Reference Manual

Details

biocViews	AnnotationData, Genetics, Homo_sapiens, TxDb
Version	3.2.2
License	Artistic-2.0
Depends	GenomicFeatures(>= 1.21.30)
Imports	AnnotationDbi
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me	annotation, chimera, FDb.InfiniumMethylation.hg19, FunciSNP, Homo.sapiens, TFEA.ChIP, variants, vulcan
Imports Me	ChIPQC, ChIPseeker, RareVariantVis, rCGH
Suggests Me	AllelicImbalance, AnnotationDbi, annotatr, ATACseqQC, beadarray, BiocOncoTK, BiocParallel, biomvRCNS, biovizBase, BSgenome.Hsapiens.UCSC.hg19, bumphunter, cgdv17, chipenrich.data, ChIPpeakAnno, chromPlot, cpvSNP, CRISPRseek, derfinder, derfinderPlot, esATAC, GA4GHclient, GA4GHshiny, gage, geneAttribution, GenomicAlignments, GenomicFeatures, GenomicRanges, GenomicScores, GenVisR, ggbio, gmapR, GoogleGenomics, gQTLstats, groHMM, GUIDEseq, HTSeqGenie, InPAS, karyoploteR, MAST, methyAnalysis, MutationalPatterns, PureCN, R3CPET, regionReport, RiboProfiling, rtracklayer, SGSeq, SigFuge, SplicingGraphs, SummarizedExperiment, trackViewer, transcriptR, tximport, VariantAnnotation, VariantFiltering
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	TxDb.Hsapiens.UCSC.hg19.knownGene_3.2.2.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Package Short Url	http://bioconductor.org/packages/TxDb.Hsapiens.UCSC.hg19.knownGene/
Package Downloads Report	Download Stats