rWikiPathways

DOI: 10.18129/B9.bioc.rWikiPathways    

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see rWikiPathways.

rWikiPathways - R client library for the WikiPathways API

Bioconductor version: 3.7

Use this package to interface with the WikiPathways API.

Author: Egon Willighagen [aut, cre] (<https://orcid.org/0000-0001-7542-0286>), Alex Pico [aut] (<https://orcid.org/0000-0001-5706-2163>)

Maintainer: Egon Willighagen <egon.willighagen at gmail.com>, Alexander Pico <alex.pico at gladstone.ucsf.edu>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("rWikiPathways")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rWikiPathways")

 

HTML	R Script	1. Overview
HTML	R Script	2. rWikiPathways and BridgeDbR
HTML	R Script	3. rWikiPathways and RCy3
HTML	R Script	4. Pathway Analysis
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	GraphAndNetwork, Metabolomics, Network, Software, ThirdPartyClient, Visualization
Version	1.0.5
License	MIT + file LICENSE
Depends	R (>= 3.5)
Imports	caTools, httr, RJSONIO, utils
LinkingTo
Suggests	testthat, BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL	https://github.com/wikipathways/rwikipathways
BugReports	https://github.com/wikipathways/rwikipathways/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	rWikiPathways_1.0.5.tar.gz
Windows Binary	rWikiPathways_1.0.5.zip
Mac OS X 10.11 (El Capitan)	rWikiPathways_1.0.5.tgz
Source Repository	git clone https://git.bioconductor.org/packages/rWikiPathways
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/rWikiPathways
Package Short Url	http://bioconductor.org/packages/rWikiPathways/
Package Downloads Report	Download Stats