XVector

DOI: 10.18129/B9.bioc.XVector    

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see XVector.

Representation and manipulation of external sequences

Bioconductor version: 3.7

Memory efficient S4 classes for storing sequences "externally" (behind an R external pointer, or on disk).

Author: Hervé Pagès and Patrick Aboyoun

Maintainer: Hervé Pagès <hpages at fredhutch.org>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("XVector")

Documentation

PDF		Reference Manual

Details

biocViews	DataRepresentation, Infrastructure, Software
Version	0.20.0
In Bioconductor since	BioC 2.13 (R-3.0) (5 years)
License	Artistic-2.0
Depends	R (>= 2.8.0), methods, BiocGenerics(>= 0.19.2), S4Vectors(>= 0.17.24), IRanges(>= 2.13.16)
Imports	methods, utils, zlibbioc, BiocGenerics, S4Vectors, IRanges
LinkingTo	S4Vectors, IRanges
Suggests	Biostrings, drosophila2probe, RUnit
SystemRequirements
Enhances
URL
Depends On Me	Biostrings, motifRG, triplex
Imports Me	BSgenome, ChIPsim, CNEr, compEpiTools, dada2, DECIPHER, gcrma, GenomicFeatures, GenomicRanges, Gviz, IONiseR, kebabs, MatrixRider, motifRG, R453Plus1Toolbox, Rsamtools, rtracklayer, TFBSTools, tracktables, VariantAnnotation
Suggests Me	IRanges
Links To Me	Biostrings, CNEr, DECIPHER, kebabs, MatrixRider, Rsamtools, rSFFreader, rtracklayer, ShortRead, triplex, VariantAnnotation, VariantFiltering
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	XVector_0.20.0.tar.gz
Windows Binary	XVector_0.20.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	XVector_0.20.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/XVector
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/XVector
Package Short Url	http://bioconductor.org/packages/XVector/
Package Downloads Report	Download Stats